RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 Q6ZSR3 168 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 DAZ4Q86SG3 579 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 UBE2J2Q8N2K1 259 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 EIF1ADQ8N9N8 165 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 OR8J1Q8NGP2 316 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 OR51E1Q8TCB6 317 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 GHSRQ92847 366 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 TUBGCP3Q96CW5 907 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 ECHDC3Q96DC8 303 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 ILKAPQ9H0C8 392 aaPredicted RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 TRIM45Q9H8W5 580 aaPredicted RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 DAZ1Q9NQZ3 744 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 TAS2R5Q9NYW4 299 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 SLC17A7Q9P2U7 560 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 FARSAQ9Y285 508 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 PRRC2BQ5JSZ5 2229 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 GOLGA6L4A6NEF3 574 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CENPBD1B2RD01 187 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 H7C1H1 209 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 DNALI1O14645 258 aaPredicted RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CCDC22O60826 627 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 FLOT1O75955 427 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CST1P01037 141 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CT45A6P0DMU7 189 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CT45A5P0DMU8 189 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CT45A7P0DMV0 189 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 TROVE2P10155 538 aaKnown RBP eCLIP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 PRKACBP22694 351 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 PRPHP41219 470 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 SLC1A1P43005 524 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 TNNT2P45379 298 aaPredicted RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 ACOT2P49753 483 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 GBX2P52951 348 aaPredicted RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 ACLYP53396 1101 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 PPP1R7Q15435 360 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CT45A1Q5HYN5 189 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 C1orf185Q5T7R7 199 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 PRAMEF5Q5TYX0 476 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 PRAMEF6Q5VXH4 476 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 AMMECR1LQ6DCA0 310 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 RNASEKQ6P5S7 137 aaKnown RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 MORN3Q6PF18 240 aaPredicted RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 OPN5Q6U736 354 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 SPNS3Q6ZMD2 512 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 MBOAT2Q6ZWT7 520 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CMC1Q7Z7K0 106 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 LINC00469Q8N7U9 141 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 UBAC2Q8NBM4 344 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 LY6G5BQ8NDX9 201 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 SLC26A10Q8NG04 563 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 OR1L1Q8NH94 360 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CT45A3Q8NHU0 189 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 KIFAP3Q92845 792 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 HAUS1Q96CS2 278 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 NRBF2Q96F24 287 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 TSGA13Q96PP4 275 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CSPG4P5Q96PW8 444 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 KCNS3Q9BQ31 491 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 PDCD1LG2Q9BQ51 273 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 ANKRD60Q9BZ19 345 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 SLIRPQ9GZT3 109 aaKnown RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 ABCG5Q9H222 651 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 OR51M1Q9H341 326 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 DYRK4Q9NR20 520 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 NLE1Q9NVX2 485 aaPredicted RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 HYPKQ9NX55 129 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 SLC2A8Q9NY64 477 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CCDC59Q9P031 241 aaKnown RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 RWDD2AQ9UIY3 292 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 RAB23Q9ULC3 237 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 CSDC2Q9Y534 153 aaKnown RBP0.72□□□□□ -2.29
SCN1A-208ENST00000625916 LRRC42Q9Y546 428 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 FHOD3Q2V2M9 1422 aa0.72□□□□□ -2.29
SCN1A-208ENST00000625916 TRIP11Q15643 1979 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 BICDL2A1A5D9 508 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 SDHAF1A6NFY7 115 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 NCBP2LA6PVI3 153 aaKnown RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 A8MWL6 223 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 D6RAR5 112 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 CLDN34H7C241 214 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 OVOL1O14753 267 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 AQP9O43315 295 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 CLDN11O75508 207 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 PRB1P04280 392 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 SERPINE2P07093 398 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 MMP7P09237 267 aaPredicted RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 NCF2P19878 526 aaPredicted RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 HTR1DP28221 377 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 PCK1P35558 622 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 ELF3P78545 371 aaPredicted RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 IFITM3Q01628 133 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 SEMG2Q02383 582 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 BST1Q10588 318 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF141Q15928 474 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 TPTE2P1Q5T6R2 138 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 C9orf135Q5VTT2 229 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 TMEM107Q6UX40 140 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 CD300LGQ6UXG3 332 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 RTL4Q6ZR62 310 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms