RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ESRRGP62508 458 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.95■□□□□ 0.14
CDX1-202ENST00000616154 HNRNPA0Q13151 305 aaKnown RBP15.95■□□□□ 0.14
CDX1-202ENST00000616154 MEP1BQ16820 701 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 SLC36A3Q495N2 470 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 SLC18B1Q6NT16 456 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 Q6ZR03 302 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 COLCA1Q6ZS62 124 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 OR52E2Q8NGJ4 325 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 C22orf15Q8WYQ4 148 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 PATZ1Q9HBE1 687 aaKnown RBP15.95■□□□□ 0.14
CDX1-202ENST00000616154 SRA1Q9HD15 236 aaKnown RBP15.95■□□□□ 0.14
CDX1-202ENST00000616154 CYB5R1Q9UHQ9 305 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 ENOPH1Q9UHY7 261 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 BAIAP2Q9UQB8 552 aa15.95■□□□□ 0.14
CDX1-202ENST00000616154 RAD23AP54725 363 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 RSPO1Q2MKA7 263 aaPredicted RBP15.94■□□□□ 0.14
CDX1-202ENST00000616154 CLEC12AQ5QGZ9 265 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 GALNT4Q8N4A0 578 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 KLHL36Q8N4N3 616 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 OR2Z1Q8NG97 314 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 SLC7A6Q92536 515 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 HAVCR1Q96D42 359 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 MBOAT4Q96T53 435 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 NMNAT2Q9BZQ4 307 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 VCXQ9H320 206 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 PNRC2Q9NPJ4 139 aaKnown RBP15.94■□□□□ 0.14
CDX1-202ENST00000616154 MMP26Q9NRE1 261 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 DDX28Q9NUL7 540 aaKnown RBP15.94■□□□□ 0.14
CDX1-202ENST00000616154 MRPL22Q9NWU5 206 aaKnown RBP15.94■□□□□ 0.14
CDX1-202ENST00000616154 SMPD3Q9NY59 655 aaPredicted RBP15.94■□□□□ 0.14
CDX1-202ENST00000616154 POLR1DQ9Y2S0 133 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 STARD10Q9Y365 291 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 MEGF8Q7Z7M0 2845 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 PKD1L1Q8TDX9 2849 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 A8MXK9 166 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 F5H0A9 414 aaPredicted RBP15.94■□□□□ 0.14
CDX1-202ENST00000616154 ZNF12P17014 697 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 SLC6A9P48067 706 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 BTG1P62324 171 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 ZNF154Q13106 437 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 ARMCX4Q5H9R4 360 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 SLC35F1Q5T1Q4 408 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 FBXW12Q6X9E4 464 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 DOK3Q7L591 496 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 LRRC28Q86X40 367 aaPredicted RBP15.94■□□□□ 0.14
CDX1-202ENST00000616154 CMBLQ96DG6 245 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 SIGLEC11Q96RL6 698 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 IL19Q9UHD0 177 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 NUP50Q9UKX7 468 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 PPIAL4AQ9Y536 164 aa15.94■□□□□ 0.14
CDX1-202ENST00000616154 DOCK11Q5JSL3 2073 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 TRAPPC2LH3BP13 241 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 SURF4O15260 269 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 WIPF1O43516 503 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 DBHP09172 617 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 HKR1P10072 659 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 RAC2P15153 192 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 EPHA2P29317 976 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 SLC25A1P53007 311 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 CRISP1P54107 249 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 CDK5Q00535 292 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 DBPQ10586 325 aaPredicted RBP15.93■□□□□ 0.14
CDX1-202ENST00000616154 ECH1Q13011 328 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 ZMYND11Q15326 602 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 PCK2Q16822 640 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 RBMS3Q6XE24 437 aaKnown RBP15.93■□□□□ 0.14
CDX1-202ENST00000616154 CFAP77Q6ZQR2 320 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 SIGLECL1Q8N7X8 197 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 SLC37A3Q8NCC5 494 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 OR2T33Q8NG76 320 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 OR2T4Q8NH00 348 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 OR4Q3Q8NH05 313 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 ITLN1Q8WWA0 313 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 PTP4A1Q93096 173 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 APOBEC3DQ96AK3 386 aaPredicted RBP15.93■□□□□ 0.14
CDX1-202ENST00000616154 TSSK6Q9BXA6 273 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 FN3KQ9H479 309 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 TOR3AQ9H497 397 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 SLC25A19Q9HC21 320 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 TBC1D23Q9NUY8 699 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 PPP1R3CQ9UQK1 317 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 ORC6Q9Y5N6 252 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 INSIG2Q9Y5U4 225 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 AUP1Q9Y679 476 aa15.93■□□□□ 0.14
CDX1-202ENST00000616154 A0A1B0GWJ7 208 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 ZAR1LA6NP61 321 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 SLC16A6O15403 523 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 SOX14O95416 240 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 POLR2IP36954 125 aaKnown RBP15.92■□□□□ 0.14
CDX1-202ENST00000616154 RBMXP38159 391 aaKnown RBP15.92■□□□□ 0.14
CDX1-202ENST00000616154 MDH2P40926 338 aaKnown RBP15.92■□□□□ 0.14
CDX1-202ENST00000616154 AQP4P55087 323 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 SEC61A1P61619 476 aaKnown RBP15.92■□□□□ 0.14
CDX1-202ENST00000616154 KLF17Q5JT82 389 aaPredicted RBP15.92■□□□□ 0.14
CDX1-202ENST00000616154 CORO6Q6QEF8 472 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 OR2V2Q96R30 315 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 PITX2Q99697 317 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 C1QTNF5Q9BXJ0 243 aa15.92■□□□□ 0.14
CDX1-202ENST00000616154 ZMAT3Q9HA38 289 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms