RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 SLC22A13Q9Y226 551 aa12.67□□□□□ -0.38
CD48-203ENST00000613788 ANKHD1Q8IWZ3 2542 aaKnown RBP12.67□□□□□ -0.38
CD48-203ENST00000613788 TENM4Q6N022 2769 aa12.67□□□□□ -0.38
CD48-203ENST00000613788 HELZ2Q9BYK8 2649 aaKnown RBP12.66□□□□□ -0.38
CD48-203ENST00000613788 TRIM64CA6NLI5 447 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 TMEM212A6NML5 194 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 H3BSA7 217 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 PLAUP00749 431 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 TTRP02766 147 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 UBCP0CG48 685 aaKnown RBP12.66□□□□□ -0.38
CD48-203ENST00000613788 GCH1P30793 250 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 MLLT11Q13015 90 aaPredicted RBP12.66□□□□□ -0.38
CD48-203ENST00000613788 GPR50Q13585 617 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 CDK5R1Q15078 307 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 ZNF718Q3SXZ3 478 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 GLYATL3Q5SZD4 288 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 TMEM244Q5VVB8 128 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 XAF1Q6GPH4 301 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 VHLLQ6RSH7 139 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 OR5AK2Q8NH90 309 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 SLC25A40Q8TBP6 338 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 SGK3Q96BR1 496 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 MARS2Q96GW9 593 aaKnown RBP12.66□□□□□ -0.38
CD48-203ENST00000613788 REEP6Q96HR9 211 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 MRPS26Q9BYN8 205 aaKnown RBP12.66□□□□□ -0.38
CD48-203ENST00000613788 OR2J1Q9GZK6 312 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 ZNF442Q9H7R0 627 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 CA10Q9NS85 328 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 PTTG3PQ9NZH4 202 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 ST6GALNAC2Q9UJ37 374 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 CMAHPQ9Y471 501 aa12.66□□□□□ -0.38
CD48-203ENST00000613788 FAM221AA4D161 298 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 OR4C45A6NMZ5 311 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 PLPP2O43688 288 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 ISG15P05161 165 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 CD1AP06126 327 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 CELP19835 753 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 COL8A1P27658 744 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 THBS4P35443 961 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 KIR3DL2P43630 455 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 SELENOVP59797 346 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 TPBGQ13641 420 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 NEDD8Q15843 81 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 GFOD2Q3B7J2 385 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 ZNF672Q499Z4 452 aaPredicted RBP12.65□□□□□ -0.38
CD48-203ENST00000613788 SPATA46Q5T0L3 261 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 DMKNQ6E0U4 476 aaPredicted RBP12.65□□□□□ -0.38
CD48-203ENST00000613788 FBXW12Q6X9E4 464 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 PGAP1Q75T13 922 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 MRPL21Q7Z2W9 205 aaKnown RBP12.65□□□□□ -0.38
CD48-203ENST00000613788 COMMD2Q86X83 199 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 ZNF676Q8N7Q3 588 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 OR51E1Q8TCB6 317 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 TMEM171Q8WVE6 324 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 UFD1Q92890 307 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 ITFG2Q969R8 447 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 SPSB4Q96A44 273 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 SMIM19Q96E16 107 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 CISD1Q9NZ45 108 aaKnown RBP12.65□□□□□ -0.38
CD48-203ENST00000613788 LRRK2Q5S007 2527 aa12.65□□□□□ -0.38
CD48-203ENST00000613788 RTTNQ86VV8 2226 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 C5orf63A6NC05 138 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 E7EQL1 145 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 GPRIN2O60269 458 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 MTRF1O75570 445 aaKnown RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 CTAG2O75638 210 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 ZFPL1O95159 310 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 CLPTM1O96005 669 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 RAC2P15153 192 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 ZNF12P17014 697 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 PSMB9P28065 219 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 APOBEC3AP31941 199 aaPredicted RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 FABP6P51161 128 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 ERVS71-1P61550 626 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 ZNF92Q03936 586 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 SLC3A1Q07837 685 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 GK2Q14410 553 aaPredicted RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 ODF4Q2M2E3 257 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 ARMCX4Q5H9R4 360 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 MBNL2Q5VZF2 373 aaKnown RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 ZFP41Q8N8Y5 198 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 CCDC54Q8NEL0 328 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 OR2AE1Q8NHA4 323 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 SYNPRQ8TBG9 265 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 RPS4Y2Q8TD47 263 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 KLF14Q8TD94 323 aaPredicted RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 CMBLQ96DG6 245 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 REPIN1Q9BWE0 567 aaKnown RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 GPR84Q9NQS5 396 aa12.64□□□□□ -0.39
CD48-203ENST00000613788 SIRT4Q9Y6E7 314 aaPredicted RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 HEATR1Q9H583 2144 aaKnown RBP12.64□□□□□ -0.39
CD48-203ENST00000613788 PNMA8CA0A1B0GUJ8 204 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 A0A1B0GVI7 797 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 P2RY10O00398 339 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 INMTO95050 263 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 IGLV3-1P01715 115 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 SMIM18P0DKX4 95 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 ZNF250P15622 560 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 SELEP16581 610 aa12.63□□□□□ -0.39
CD48-203ENST00000613788 CPEP16870 476 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms