RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 HSD11B2P80365 405 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 PLEKHN1Q494U1 663 aaPredicted RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 LCN10Q6JVE6 187 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 ACOT7LQ6ZUV0 252 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 FAM57BQ71RH2 274 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 H1FNTQ75WM6 255 aaPredicted RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 ZFP82Q8N141 532 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 OR5B2Q96R09 309 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 SMIM3Q9BZL3 60 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF319Q9P2F9 582 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 F5H5K5 113 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 F8W036 122 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 BCL2L11O43521 198 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 RNF4P78317 190 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 BLOC1S1P78537 153 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 AIMP2Q13155 320 aaKnown RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 MPPED2Q15777 294 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 STT3BQ8TCJ2 826 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 C2CD4CQ8TF44 421 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 RRNAD1Q96FB5 475 aaKnown RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 LMAN1LQ9HAT1 526 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 GPR84Q9NQS5 396 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 EIF4E2O60573 245 aaKnown RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 NPIPB7O75200 414 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 FBXO24O75426 580 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 RAB3AP20336 220 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 AKR1C3P42330 323 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 DHPSP49366 369 aaPredicted RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 CLRN1P58418 232 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 FGL1Q08830 312 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 SGCAQ16586 387 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 PAN3Q58A45 887 aaKnown RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 PDSS1Q5T2R2 415 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 BATF2Q8N1L9 274 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 SLC38A9Q8NBW4 561 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 OR51F2Q8NH61 342 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF701Q9NV72 531 aaPredicted RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 HPF1Q9NWY4 346 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 KLHL13Q9P2N7 655 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 RAB22AQ9UL26 194 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 IGKV3D-11A0A0A0MRZ8 115 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 EFSO43281 561 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 GP1BAP07359 652 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 CHAF1BQ13112 559 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 MICBQ29980 383 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF585AQ6P3V2 769 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF813Q6ZN06 617 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 PUSL1Q8N0Z8 303 aaKnown RBP12.48□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF283Q8N7M2 679 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 OR4K17Q8NGC6 315 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 OR5D14Q8NGL3 314 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 OR10S1Q8NGN2 331 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 ASB10Q8WXI3 467 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 ARHGAP5-AS1Q96IT6 56 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 CCNL2Q96S94 520 aaPredicted RBP12.48□□□□□ -0.41
COL6A1-207ENST00000612273 AIFM2Q9BRQ8 373 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 SLC25A32Q9H2D1 315 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 MRPS28Q9Y2Q9 187 aaKnown RBP12.48□□□□□ -0.41
COL6A1-207ENST00000612273 CACNA1EQ15878 2313 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 A0A1B0GV50 99 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 SULT2B1O00204 365 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 ABCD4O14678 606 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 NME1P15531 152 aaKnown RBP12.48□□□□□ -0.41
COL6A1-207ENST00000612273 C14orf28Q4W4Y0 310 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 FDX2Q6P4F2 183 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 TMEM17Q86X19 198 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 LRRC18Q8N456 261 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 OR2AJ1Q8NGZ0 328 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 ALX4Q9H161 411 aaPredicted RBP12.48□□□□□ -0.41
COL6A1-207ENST00000612273 C1orf198Q9H425 327 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 MLXQ9UH92 298 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 MMACHCQ9Y4U1 282 aa12.48□□□□□ -0.41
COL6A1-207ENST00000612273 TRBV11-1A0A0K0K1C0 115 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 A0A1B0GW55 424 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 SSX5O60225 188 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 GDF9O60383 454 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 ACTL6AO96019 429 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 DUX4L2P0CJ85 424 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 DUX4L3P0CJ86 424 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 DUX4L4P0CJ87 422 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 DUX4L5P0CJ88 424 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 DUX4L6P0CJ89 424 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 DUX4L7P0CJ90 424 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 GLRA1P23415 457 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 OR3A2P47893 321 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 ID4P47928 161 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 NKAPLQ5M9Q1 402 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 HAGHLQ6PII5 290 aaPredicted RBP12.47□□□□□ -0.41
COL6A1-207ENST00000612273 SLC25A42Q86VD7 318 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 SLC22A24Q8N4F4 322 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 RAB3CQ96E17 227 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 SCPEP1Q9HB40 452 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 SERINC1Q9NRX5 453 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 SLC22A11Q9NSA0 550 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 DUX4Q9UBX2 424 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 IGHV3-15A0A0B4J1V0 119 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 IGHV1OR15-9A0A0B4J2B8 117 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 MED19A0JLT2 244 aaPredicted RBP12.47□□□□□ -0.41
COL6A1-207ENST00000612273 SHISA7A6NL88 538 aa12.47□□□□□ -0.41
COL6A1-207ENST00000612273 VSTM2BA6NLU5 285 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms