RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 M0R135 149 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 PNPP00491 289 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 CCNOP22674 350 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 NR4A1P22736 598 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 PSMB9P28065 219 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 APLNRP35414 380 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 TGM4P49221 684 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 CX3CR1P49238 355 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 MMP16P51512 607 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 BDH1Q02338 343 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 MFGE8Q08431 387 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-207ENST00000597136 MRPL28Q13084 256 aaKnown RBP12.91□□□□□ -0.34
TRIM28-207ENST00000597136 TIGD6Q17RP2 521 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 MSMPQ1L6U9 139 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 CCDC58Q4VC31 144 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 SYT6Q5T7P8 510 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-207ENST00000597136 FDX2Q6P4F2 183 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 IL17RDQ8NFM7 739 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 HAVCR2Q8TDQ0 301 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 IGFBPL1Q8WX77 278 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 ZNF799Q96GE5 643 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 FAM206AQ9NX38 181 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 LAMP3Q9UQV4 416 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 SIRT4Q9Y6E7 314 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-207ENST00000597136 R4GMQ9 66 aa12.91□□□□□ -0.34
TRIM28-207ENST00000597136 FLNAP21333 2647 aaKnown RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 C5orf49A4QMS7 147 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 OGG1O15527 345 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 APOC1P02654 83 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 RAF1P04049 648 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 ACSM4P0C7M7 580 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 THBS4P35443 961 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 ALDH3B2P48448 385 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 GDI2P50395 445 aaKnown RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 FABP6P51161 128 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 GP2P55259 537 aaKnown RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 TPTEP56180 551 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 ZNF121P58317 390 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 TAS2R43P59537 309 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 NANOS3P60323 173 aaKnown RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 PSMA6P60900 246 aaKnown RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 NKX6-1P78426 367 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 MLLT11Q13015 90 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 ZNF829Q3KNS6 432 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-207ENST00000597136 ARMCX4Q5H9R4 360 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 NAA40Q86UY6 237 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 ZNF283Q8N7M2 679 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 OR2G2Q8NGZ5 317 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 OPALINQ96PE5 141 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 DOK1Q99704 481 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 DHRS9Q9BPW9 319 aa12.9□□□□□ -0.34
TRIM28-207ENST00000597136 GPRIN2O60269 458 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 FAM157BP0CG42 384 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 TTKP33981 857 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 WNT5AP41221 380 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 RPL5P46777 297 aaKnown RBP12.9□□□□□ -0.35
TRIM28-207ENST00000597136 SNTB2Q13425 540 aaKnown RBP12.9□□□□□ -0.35
TRIM28-207ENST00000597136 TPBGQ13641 420 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 ALKBH1Q13686 389 aaKnown RBP12.9□□□□□ -0.35
TRIM28-207ENST00000597136 TBC1D28Q2M2D7 210 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 MST1LQ2TV78 715 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 RPL22L1Q6P5R6 122 aaKnown RBP12.9□□□□□ -0.35
TRIM28-207ENST00000597136 DRAM2Q6UX65 266 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 C20orf204Q6ZNR8 217 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 PRSS45Q7RTY3 260 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 CATSPERDQ86XM0 798 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 PRSS35Q8N3Z0 413 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 ZFP41Q8N8Y5 198 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 CDH20Q9HBT6 801 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 BRD7Q9NPI1 651 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 G6PC2Q9NQR9 355 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 CA10Q9NS85 328 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 FRRS1LQ9P0K9 344 aa12.9□□□□□ -0.35
TRIM28-207ENST00000597136 ZNF469Q96JG9 3925 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-207ENST00000597136 ACOD1A6NK06 481 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 LOC110117498-PIK3R3F6TDL0 507 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 NGFP01138 241 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 SLC2A1P11166 492 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 CPEP16870 476 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 CELP19835 753 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 DNASE1P24855 282 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 APOBEC3AP31941 199 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-207ENST00000597136 SLC6A9P48067 706 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 CCR9P51686 369 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 ERVS71-1P61550 626 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 CDK5R1Q15078 307 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 ADIPOQQ15848 244 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 DMKNQ6E0U4 476 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-207ENST00000597136 ZNF101Q8IZC7 436 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 OR1J2Q8NGS2 313 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 RPS4Y2Q8TD47 263 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 TMEM171Q8WVE6 324 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 PPP1R14AQ96A00 147 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 TMIGD2Q96BF3 282 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 C4orf45Q96LM5 186 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 DCLRE1CQ96SD1 692 aaKnown RBP12.89□□□□□ -0.35
TRIM28-207ENST00000597136 CCL19Q99731 98 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 OR52A1Q9UKL2 312 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 ITGB1BP2Q9UKP3 347 aa12.89□□□□□ -0.35
TRIM28-207ENST00000597136 TRBV2A0A0J9YWF9 115 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms