RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 TVP23BQ9NYZ1 205 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 SVEP1Q4LDE5 3571 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 DOCK11Q5JSL3 2073 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 FAM157AC9JC47 383 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 MLNRO43193 412 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 XRCC2O43543 280 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 IFNA2P01563 188 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 IGHV2-5P01817 119 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 ANPEPP15144 967 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 CX3CR1P49238 355 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 RPS7P62081 194 aaKnown RBP13.69□□□□□ -0.22
TRIM28-206ENST00000595974 ZNF92Q03936 586 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 PTGES3Q15185 160 aaKnown RBP13.69□□□□□ -0.22
TRIM28-206ENST00000595974 CR1LQ2VPA4 569 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 GLYATL3Q5SZD4 288 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 LCN1P1Q5VSP4 162 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 SPATC1Q76KD6 591 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 BBS1Q8NFJ9 593 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 OR2AE1Q8NHA4 323 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 SPRYD4Q8WW59 207 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-206ENST00000595974 MEGF10Q96KG7 1140 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 GAL3ST1Q99999 423 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 REPIN1Q9BWE0 567 aaKnown RBP13.69□□□□□ -0.22
TRIM28-206ENST00000595974 SLC22A4Q9H015 551 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 SP140LQ9H930 580 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 NPTNQ9Y639 398 aa13.69□□□□□ -0.22
TRIM28-206ENST00000595974 ISPDA4D126 451 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 CD300LBA8K4G0 201 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 SELENOFO60613 162 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 IGHV2-70P01814 119 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 LYNP07948 512 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 SLC2A1P11166 492 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 ANOS1P23352 680 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 OPRL1P41146 370 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 MMP16P51512 607 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 PRSS12P56730 875 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 ACTR3P61158 418 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 APOFQ13790 326 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 SLX4IPQ5VYV7 408 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 CELF2-AS1Q8N7Q2 184 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 SPSB4Q96A44 273 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 TMEM186Q96B77 213 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 CENPNQ96H22 339 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-206ENST00000595974 AMELYQ99218 206 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 GCM1Q9NP62 436 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 DCAF16Q9NXF7 216 aa13.68□□□□□ -0.22
TRIM28-206ENST00000595974 ARHGAP32A7KAX9 2087 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 TRAV20A0A0B4J274 112 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 GGT3PA6NGU5 568 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 ZAR1LA6NP61 321 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 KIAA1324LA8MWY0 1029 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-206ENST00000595974 F5H5P2 479 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 H0YL77 283 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 EBAG9O00559 213 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 MITFO75030 526 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-206ENST00000595974 ANXA2P07355 339 aaKnown RBP13.67□□□□□ -0.22
TRIM28-206ENST00000595974 H2BFMP0C1H6 154 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 SRD5A1P18405 259 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 NAA10P41227 235 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-206ENST00000595974 GATA4P43694 442 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 RAD23AP54725 363 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 ZNF181Q2M3W8 571 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 ZFP1Q6P2D0 407 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 SLC16A9Q7RTY1 509 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 OR52H1Q8NGJ2 320 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 SIGLEC11Q96RL6 698 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 OSBPL10Q9BXB5 764 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 LPAR2Q9HBW0 351 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 TMEFF2Q9UIK5 374 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-206ENST00000595974 OAZ3Q9UMX2 235 aa13.67□□□□□ -0.22
TRIM28-206ENST00000595974 CUBNO60494 3623 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 C5orf63A6NC05 138 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 CCDC182A6NF36 153 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 TMEM178BH3BS89 294 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 TBX1O43435 398 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 PRKYO43930 277 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 HLA-DPB1P04440 258 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 CFL1P23528 166 aaKnown RBP13.66□□□□□ -0.22
TRIM28-206ENST00000595974 DDOSTP39656 456 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 CD200P41217 278 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 ZNF121P58317 390 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-206ENST00000595974 BTG1P62324 171 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 KPNB1Q14974 876 aaKnown RBP13.66□□□□□ -0.22
TRIM28-206ENST00000595974 OR8G1Q15617 311 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 TIGD6Q17RP2 521 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 TMEM155Q4W5P6 130 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 C12orf73Q69YU5 71 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 IL17RELQ6ZVW7 336 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 PRSS45Q7RTY3 260 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-206ENST00000595974 SPICQ8N5J4 248 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 THEM6Q8WUY1 208 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 PYDC1Q8WXC3 89 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 CIB1Q99828 191 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 ADAT1Q9BUB4 502 aaKnown RBP13.66□□□□□ -0.22
TRIM28-206ENST00000595974 YIPF3Q9GZM5 350 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 SEMA6AQ9H2E6 1030 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 NIPAL2Q9H841 368 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 HIF1ANQ9NWT6 349 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 DNAJC27Q9NZQ0 273 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms