RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SLC2A1P11166 492 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 ANPEPP15144 967 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 ZNF121P58317 390 aaPredicted RBP12.77□□□□□ -0.37
UPF1-202ENST00000594243 ZNF92Q03936 586 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 SLC25A30Q5SVS4 291 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 GLYATL3Q5SZD4 288 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 MEDAGQ5VYS4 303 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 LRRN1Q6UXK5 716 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 Q6ZR03 302 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 SPRYD4Q8WW59 207 aaPredicted RBP12.77□□□□□ -0.37
UPF1-202ENST00000594243 YIPF5Q969M3 257 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 RDH12Q96NR8 316 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 SLC30A2Q9BRI3 323 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 ZNF275Q9NSD4 429 aaPredicted RBP12.77□□□□□ -0.37
UPF1-202ENST00000594243 TMEM100Q9NV29 134 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 CLN6Q9NWW5 311 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 DNAJC27Q9NZQ0 273 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.77□□□□□ -0.37
UPF1-202ENST00000594243 GMPPBQ9Y5P6 360 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 ARID1AO14497 2285 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 VPS13CQ709C8 3753 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 LOC100130705A0A1B0GUX0 176 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 GGT3PA6NGU5 568 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 SNTNA6NMZ2 147 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 E9PQ18 207 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 ZNF670-ZNF695F2Z2N8 137 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 MPZL2O60487 215 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 CDC14BO60729 498 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 SBK2P0C263 348 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 CFL1P23528 166 aaKnown RBP12.76□□□□□ -0.37
UPF1-202ENST00000594243 DCTDP32321 178 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 ATP6V1E1P36543 226 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 DDOSTP39656 456 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 GPR6P46095 362 aaPredicted RBP12.76□□□□□ -0.37
UPF1-202ENST00000594243 SNRPGP62308 76 aaKnown RBP12.76□□□□□ -0.37
UPF1-202ENST00000594243 SLC3A1Q07837 685 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 RCN1Q15293 331 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 TIGD6Q17RP2 521 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 FAM57BQ71RH2 274 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 SLC35F2Q8IXU6 374 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 ZNF679Q8IYX0 411 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 BHLHE23Q8NDY6 225 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 OR51G2Q8NGK0 314 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 OR2AE1Q8NHA4 323 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 SPSB4Q96A44 273 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 PGAM5Q96HS1 289 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 MBOAT4Q96T53 435 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 SLC22A4Q9H015 551 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 OR10A2Q9H208 303 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 ADGRL4Q9HBW9 690 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 KLHDC2Q9Y2U9 406 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 NOP16Q9Y3C1 178 aaKnown RBP12.76□□□□□ -0.37
UPF1-202ENST00000594243 LRP12Q9Y561 859 aa12.76□□□□□ -0.37
UPF1-202ENST00000594243 NIPBLQ6KC79 2804 aaeCLIP12.75□□□□□ -0.37
UPF1-202ENST00000594243 ACOD1A6NK06 481 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 CD300LBA8K4G0 201 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 PPIHO43447 177 aaKnown RBP12.75□□□□□ -0.37
UPF1-202ENST00000594243 RP2O75695 350 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 TACSTD2P09758 323 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 OR2T7P0C7T2 308 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 CHN2P52757 468 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 CXCR4P61073 352 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 ROM1Q03395 351 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 EGR3Q06889 387 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 TRIP10Q15642 601 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 OCLNQ16625 522 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 TMEM249Q2WGJ8 235 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 PRSS45Q7RTY3 260 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 ZNF555Q8NEP9 628 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 OR2T27Q8NH04 317 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 CCL17Q92583 94 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 UBE2FQ969M7 185 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 SGK3Q96BR1 496 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 OR8B4Q96RC9 309 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 RGCCQ9H4X1 137 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 DCLRE1BQ9H816 532 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 BRD7Q9NPI1 651 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 FAM118AQ9NWS6 357 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 SMPD3Q9NY59 655 aaPredicted RBP12.75□□□□□ -0.37
UPF1-202ENST00000594243 COPS3Q9UNS2 423 aa12.75□□□□□ -0.37
UPF1-202ENST00000594243 IGHV4-61A0A0C4DH41 118 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 A0A1B0GWJ7 208 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 C5orf63A6NC05 138 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 ERICH4A6NGS2 130 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 CLDN25C9JDP6 229 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 PSMD9O00233 223 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 SLC16A6O15403 523 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 SRP9P49458 86 aaKnown RBP12.74□□□□□ -0.37
UPF1-202ENST00000594243 RIDAP52758 137 aaKnown RBP12.74□□□□□ -0.37
UPF1-202ENST00000594243 PSMA6P60900 246 aaKnown RBP12.74□□□□□ -0.37
UPF1-202ENST00000594243 LRRC36Q1X8D7 754 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 ZNF322Q6U7Q0 402 aaPredicted RBP12.74□□□□□ -0.37
UPF1-202ENST00000594243 PEG10Q86TG7 708 aaKnown RBP12.74□□□□□ -0.37
UPF1-202ENST00000594243 GALNT4Q8N4A0 578 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 PACRGLQ8N7B6 248 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 RAB1CQ92928 201 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 TIMD4Q96H15 378 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 REEP6Q96HR9 211 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 Q96MT0 163 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 OR2V2Q96R30 315 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms