RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 XRCC2O43543 280 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 CHN2P52757 468 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 TMEM33P57088 247 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 ZBTB49Q6ZSB9 765 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.35□□□□□ -0.43
VRK3-206ENST00000594090 OR10AD1Q8NGE0 317 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 OR13G1Q8NGZ3 307 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 SLC30A2Q9BRI3 323 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 REPIN1Q9BWE0 567 aaKnown RBP12.35□□□□□ -0.43
VRK3-206ENST00000594090 OPA3Q9H6K4 179 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 SP140LQ9H930 580 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 IMPAD1Q9NX62 359 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 HAO2Q9NYQ3 351 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 COPS3Q9UNS2 423 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 LRP12Q9Y561 859 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 TMEM14AQ9Y6G1 99 aa12.35□□□□□ -0.43
VRK3-206ENST00000594090 A0A1B0GWJ7 208 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 LRP5LA4QPB2 252 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 CD300LBA8K4G0 201 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 MLNRO43193 412 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 TBX1O43435 398 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 PPIHO43447 177 aaKnown RBP12.34□□□□□ -0.43
VRK3-206ENST00000594090 CD5LO43866 347 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 IGHV4-31P0DP07 118 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 HTR1FP30939 366 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 PSMA6P60900 246 aaKnown RBP12.34□□□□□ -0.43
VRK3-206ENST00000594090 TIGD6Q17RP2 521 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 HFEQ30201 348 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 KCTD18Q6PI47 426 aaPredicted RBP12.34□□□□□ -0.43
VRK3-206ENST00000594090 FAM57BQ71RH2 274 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 KRT77Q7Z794 578 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 RFLNBQ8N5W9 214 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 SPRYD4Q8WW59 207 aaPredicted RBP12.34□□□□□ -0.43
VRK3-206ENST00000594090 ITLN1Q8WWA0 313 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 ASB17Q8WXJ9 295 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 SPSB4Q96A44 273 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 OR2V2Q96R30 315 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 WARS2Q9UGM6 360 aaKnown RBP12.34□□□□□ -0.43
VRK3-206ENST00000594090 IL19Q9UHD0 177 aa12.34□□□□□ -0.43
VRK3-206ENST00000594090 YLPM1P49750 1951 aaKnown RBP12.34□□□□□ -0.43
VRK3-206ENST00000594090 GGT3PA6NGU5 568 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 PRR32B1ATL7 298 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 CLDN25C9JDP6 229 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 H0YL77 283 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 PSMD9O00233 223 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 SBK2P0C263 348 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 ROM1Q03395 351 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 RCN1Q15293 331 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 DEGS2Q6QHC5 323 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 SLC35F2Q8IXU6 374 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 OR52H1Q8NGJ2 320 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 OR51G2Q8NGK0 314 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 TRUB1Q8WWH5 349 aaKnown RBP12.33□□□□□ -0.44
VRK3-206ENST00000594090 CCL17Q92583 94 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 UBE2FQ969M7 185 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 REEP6Q96HR9 211 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 OR8B4Q96RC9 309 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 MNTQ99583 582 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 TTTY10Q9BZA0 68 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 OR10A2Q9H208 303 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 NIPAL2Q9H841 368 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 BRD7Q9NPI1 651 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 TMEM100Q9NV29 134 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 CLN6Q9NWW5 311 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 TREM2Q9NZC2 230 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 ZNF319Q9P2F9 582 aa12.33□□□□□ -0.44
VRK3-206ENST00000594090 ANPEPP15144 967 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 ZNF16P17020 682 aaPredicted RBP12.32□□□□□ -0.44
VRK3-206ENST00000594090 TNFRSF1AP19438 455 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 IL2RGP31785 369 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 GZMKP49863 264 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 POU4F2Q12837 409 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 HNRNPA0Q13151 305 aaKnown RBP12.32□□□□□ -0.44
VRK3-206ENST00000594090 TMED1Q13445 227 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 C6orf52Q5T4I8 152 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 ZNF679Q8IYX0 411 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 OR56B2PQ8NGI1 322 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 RFKQ969G6 155 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 PGAM5Q96HS1 289 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 MEGF10Q96KG7 1140 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 MROQ9BYG7 248 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 NARFLQ9H6Q4 476 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 IKZF2Q9UKS7 526 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 GMPPBQ9Y5P6 360 aa12.32□□□□□ -0.44
VRK3-206ENST00000594090 ZANQ9Y493 2812 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 hCG_38984A0A1B0GV85 526 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 PHYHO14832 338 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 WNT9BO14905 357 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 ZNF254O75437 659 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 HLA-DPB1P04440 258 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 CFL1P23528 166 aaKnown RBP12.31□□□□□ -0.44
VRK3-206ENST00000594090 SRP9P49458 86 aaKnown RBP12.31□□□□□ -0.44
VRK3-206ENST00000594090 CXCR4P61073 352 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 SNRPGP62308 76 aaKnown RBP12.31□□□□□ -0.44
VRK3-206ENST00000594090 FAM3AP98173 230 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 MVKQ03426 396 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 SLC3A1Q07837 685 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 GFOD2Q3B7J2 385 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 SLC25A30Q5SVS4 291 aa12.31□□□□□ -0.44
VRK3-206ENST00000594090 AVPI1Q5T686 147 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms