RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CD200P41217 278 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 SLC6A9P48067 706 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 CDK5Q00535 292 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 MVKQ03426 396 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 CCNIQ14094 377 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 CRMP1Q14194 572 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 GK2Q14410 553 aaPredicted RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 MEP1BQ16820 701 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 CORO6Q6QEF8 472 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 CFAP77Q6ZQR2 320 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 Q6ZR03 302 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 MRPL21Q7Z2W9 205 aaKnown RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 DCXRQ7Z4W1 244 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 SPATA24Q86W54 205 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 CYB561A3Q8NBI2 242 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 OR8D4Q8NGM9 314 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 NANPQ8TBE9 248 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 SLC7A6Q92536 515 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 SPSB4Q96A44 273 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 SLC7A6OSQ96CW6 309 aaPredicted RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 ZMYND19Q96E35 227 aaPredicted RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 DUS3LQ96G46 650 aaKnown RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 MAP6Q96JE9 813 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 DMRTB1Q96MA1 342 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 OR2V2Q96R30 315 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 INTS14Q96SY0 518 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 MNTQ99583 582 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 COPS4Q9BT78 406 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 SOX7Q9BT81 388 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 PATZ1Q9HBE1 687 aaKnown RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 ARMC1Q9NVT9 282 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 C14orf119Q9NWQ9 140 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 TMEM14AQ9Y6G1 99 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 A8MXK9 166 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 KCNAB3O43448 404 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 PLPP2O43688 288 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 FKBP6O75344 327 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 TIPRLO75663 272 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 FPR2P25090 351 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 HSD11B1P28845 292 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 DCTDP32321 178 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 NPY4RP50391 375 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 BPIFB3P59826 476 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 ACTR3P61158 418 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 ACTG1P63261 375 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 CBX1P83916 185 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 GINS1Q14691 196 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 HLXQ14774 488 aaPredicted RBP8.85□□□□□ -0.99
LIG3-212ENST00000590181 ESCO2Q56NI9 601 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 DCAF12L2Q5VW00 463 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 OR2T2Q6IF00 324 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 NLRC3Q7RTR2 1065 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 LINC00346Q8IVM7 164 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 CSNK2A3Q8NEV1 391 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 OR6K6Q8NGW6 343 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 ZNF418Q8TF45 676 aaPredicted RBP8.85□□□□□ -0.99
LIG3-212ENST00000590181 RNF133Q8WVZ7 376 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 ITLN1Q8WWA0 313 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 SLAMF6Q96DU3 332 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 MEGF10Q96KG7 1140 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 NIPSNAP1Q9BPW8 284 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 SLC25A19Q9HC21 320 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 G6PC2Q9NQR9 355 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 PTTG3PQ9NZH4 202 aa8.85□□□□□ -0.99
LIG3-212ENST00000590181 ISPDA4D126 451 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 GGT3PA6NGU5 568 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 CD300LBA8K4G0 201 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 FAM157AC9JC47 383 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 ZNF254O75437 659 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 SOX14O95416 240 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 SPARCP09486 303 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 SBK2P0C263 348 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 ADRA2CP18825 462 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 PYCR1P32322 319 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 OR8G1Q15617 311 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 TMEM255AQ5JRV8 349 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 LINC01590Q5TEZ4 76 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 LCN1P1Q5VSP4 162 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 FAHD2BQ6P2I3 314 aaPredicted RBP8.84□□□□□ -0.99
LIG3-212ENST00000590181 KCTD18Q6PI47 426 aaPredicted RBP8.84□□□□□ -0.99
LIG3-212ENST00000590181 C1QL2Q7Z5L3 287 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.84□□□□□ -0.99
LIG3-212ENST00000590181 ZDHHC13Q8IUH4 622 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 SEMA6DQ8NFY4 1073 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 OR4Q3Q8NH05 313 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 OR5K1Q8NHB7 308 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 OTOSQ8NHW6 89 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 ASB17Q8WXJ9 295 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 SLCO4A1Q96BD0 722 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 FAHD2AQ96GK7 314 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 CADM1Q9BY67 442 aaKnown RBP8.84□□□□□ -0.99
LIG3-212ENST00000590181 YIPF3Q9GZM5 350 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 OR10A2Q9H208 303 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 WDR76Q9H967 626 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 FN3KRPQ9HA64 309 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 PAPOLBQ9NRJ5 636 aaKnown RBP8.84□□□□□ -0.99
LIG3-212ENST00000590181 KIF17Q9P2E2 1029 aa8.84□□□□□ -0.99
LIG3-212ENST00000590181 ANKRD30BLA7E2S9 258 aa8.83□□□□□ -1
LIG3-212ENST00000590181 F5H0A9 414 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms