RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	IGFN1	Q86VF2	1251 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	ZDHHC13	Q8IUH4	622 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	OR52L1	Q8NGH7	329 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	OR10S1	Q8NGN2	331 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	ZNF420	Q8TAQ5	688 aa	Predicted RBP	11.33	□□□□□ -0.6
SS18-222	ENST00000582792	PTP4A1	Q93096	173 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	ZDHHC16	Q969W1	377 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	NEIL1	Q96FI4	390 aa	Predicted RBP	11.33	□□□□□ -0.6
SS18-222	ENST00000582792	PLEKHA8	Q96JA3	519 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	COG8	Q96MW5	612 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	CITED1	Q99966	193 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	TMEM165	Q9HC07	324 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	EMC7	Q9NPA0	242 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	GRHPR	Q9UBQ7	328 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	MIOX	Q9UGB7	285 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	BAIAP2	Q9UQB8	552 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	KIR2DS1	A0A191URI9	304 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792		G3V2T6	193 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	SGCE	O43556	437 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	ZNF205	O95201	554 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	FSTL3	O95633	263 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	CYB5R3	P00387	301 aa	Predicted RBP	11.32	□□□□□ -0.6
SS18-222	ENST00000582792	CRYBA1	P05813	215 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	RAC2	P15153	192 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	RELB	Q01201	579 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	SLC27A4	Q6P1M0	643 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	BRD3OS	Q6XYD6	125 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	VASH1	Q7L8A9	365 aa	Predicted RBP	11.32	□□□□□ -0.6
SS18-222	ENST00000582792	ADCK1	Q86TW2	530 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	ATG16L2	Q8NAA4	619 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	STMN2	Q93045	179 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	MEGF10	Q96KG7	1140 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	ZNF570	Q96NI8	536 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	PKP2	Q99959	881 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	NIPSNAP1	Q9BPW8	284 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	TMEM246	Q9BRR3	403 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	MMP27	Q9H306	513 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	C1RL	Q9NZP8	487 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	DOCK11	Q5JSL3	2073 aa		11.32	□□□□□ -0.6
SS18-222	ENST00000582792	ERICH4	A6NGS2	130 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792		M0QZ24	198 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	XKRY	O14609	159 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	NDUFA7	O95182	113 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	OSM	P13725	252 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	DAP	P51397	102 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	BPIFB3	P59826	476 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	ZNF181	Q2M3W8	571 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	ZNF404	Q494X3	552 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	BRICD5	Q6PL45	260 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	FIP1L1	Q6UN15	594 aa	Known RBP	11.31	□□□□□ -0.6
SS18-222	ENST00000582792		Q6YL49	198 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	RHOU	Q7L0Q8	258 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	NLRC3	Q7RTR2	1065 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	HS3ST5	Q8IZT8	346 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	OR5AS1	Q8N127	324 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	PQLC1	Q8N2U9	271 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	LNX2	Q8N448	690 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	OR10AD1	Q8NGE0	317 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	OR8B3	Q8NGG8	313 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	OR8B2	Q96RD0	313 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	NUDT16L1	Q9BRJ7	211 aa	Known RBP	11.31	□□□□□ -0.6
SS18-222	ENST00000582792	MARCH7	Q9H992	704 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	NOX4	Q9NPH5	578 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	TNFRSF19	Q9NS68	423 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	VSX1	Q9NZR4	365 aa	Predicted RBP	11.31	□□□□□ -0.6
SS18-222	ENST00000582792	ENOPH1	Q9UHY7	261 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	IER3IP1	Q9Y5U9	82 aa		11.31	□□□□□ -0.6
SS18-222	ENST00000582792	CLPSL1	A2RUU4	121 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	PRSS37	A4D1T9	235 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792		H7C1C5	153 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792		J3QW42	95 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	BHLHE40	O14503	412 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	TIMM23	O14925	209 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	PRKACG	P22612	351 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	PITPNB	P48739	271 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	SRP9	P49458	86 aa	Known RBP	11.3	□□□□□ -0.6
SS18-222	ENST00000582792	FGF12	P61328	243 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	LCN6	P62502	163 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	ESRRG	P62508	458 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	KRR1	Q13601	381 aa	Known RBP	11.3	□□□□□ -0.6
SS18-222	ENST00000582792	GPR157	Q5UAW9	335 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	KDM4D	Q6B0I6	523 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	FBXW12	Q6X9E4	464 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	TMEM86B	Q8N661	226 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	OR2T33	Q8NG76	320 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	OR8G5	Q8NG78	346 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	OR13G1	Q8NGZ3	307 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	SLC7A6	Q92536	515 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792		Q96M85	177 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	ERMAP	Q96PL5	475 aa	Predicted RBP	11.3	□□□□□ -0.6
SS18-222	ENST00000582792	RBM4B	Q9BQ04	359 aa	Known RBP	11.3	□□□□□ -0.6
SS18-222	ENST00000582792	IFT27	Q9BW83	186 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	TSSK6	Q9BXA6	273 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	CHIA	Q9BZP6	476 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	SEMA6A	Q9H2E6	1030 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	EGLN3	Q9H6Z9	239 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	PTTG3P	Q9NZH4	202 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	KIF17	Q9P2E2	1029 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	CLN8	Q9UBY8	286 aa		11.3	□□□□□ -0.6
SS18-222	ENST00000582792	ADAM18	Q9Y3Q7	739 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms