RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ANOS1P23352 680 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 FASP25445 335 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 HSD11B1P28845 292 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 CRISP1P54107 249 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 ZNF92Q03936 586 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 GLYATL3Q5SZD4 288 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 PARP8Q8N3A8 854 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 TOR3AQ9H497 397 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 GCM1Q9NP62 436 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 TVP23BQ9NYZ1 205 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 TRAV20A0A0B4J274 112 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 G3V2T6 193 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 HLA-DPB1P04440 258 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 CX3CR1P49238 355 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 MMP16P51512 607 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 RPS7P62081 194 aaKnown RBP20.15■□□□□ 0.82
SHMT1-206ENST00000579558 SNAPC1Q16533 368 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 CXXC5Q7LFL8 322 aaKnown RBP20.15■□□□□ 0.82
SHMT1-206ENST00000579558 BBS1Q8NFJ9 593 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 RNF133Q8WVZ7 376 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 DUS3LQ96G46 650 aaKnown RBP20.15■□□□□ 0.82
SHMT1-206ENST00000579558 MDFIQ99750 246 aa20.15■□□□□ 0.82
SHMT1-206ENST00000579558 IGHV3-64DA0A0J9YX35 117 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 A0A1B0GWJ7 208 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 GGT3PA6NGU5 568 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 CD300LBA8K4G0 201 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 IFNL4K9M1U5 179 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 SELENOFO60613 162 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 FCGR1AP12314 374 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 SRP14P37108 136 aaKnown RBP20.14■□□□□ 0.81
SHMT1-206ENST00000579558 SLC35D3Q5M8T2 416 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 AMIGO2Q86SJ2 522 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 ZNF420Q8TAQ5 688 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-206ENST00000579558 SIGLEC11Q96RL6 698 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 AMELYQ99218 206 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 REPIN1Q9BWE0 567 aaKnown RBP20.14■□□□□ 0.81
SHMT1-206ENST00000579558 KRT84Q9NSB2 600 aa20.14■□□□□ 0.81
SHMT1-206ENST00000579558 TMEM178BH3BS89 294 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 TBX1O43435 398 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 XRCC2O43543 280 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 PLPP2O43688 288 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 ANXA2P07355 339 aaKnown RBP20.13■□□□□ 0.81
SHMT1-206ENST00000579558 NAA10P41227 235 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-206ENST00000579558 RAD23AP54725 363 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 BTG1P62324 171 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 ESRRGP62508 458 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 PTGES3Q15185 160 aaKnown RBP20.13■□□□□ 0.81
SHMT1-206ENST00000579558 MOGAT3Q86VF5 341 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 ZDHHC13Q8IUH4 622 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 SPICQ8N5J4 248 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 OTOSQ8NHW6 89 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 LRTOMTQ8WZ04 291 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 OPA3Q9H6K4 179 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 PCDHB10Q9UN67 800 aa20.13■□□□□ 0.81
SHMT1-206ENST00000579558 NOP16Q9Y3C1 178 aaKnown RBP20.13■□□□□ 0.81
SHMT1-206ENST00000579558 MITFO75030 526 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-206ENST00000579558 APOC1P02654 83 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 LYNP07948 512 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 H2BFMP0C1H6 154 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 SLC2A5P22732 501 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 CA6P23280 308 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 OPRL1P41146 370 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 APOFQ13790 326 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 ZMYND11Q15326 602 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 OR8G1Q15617 311 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 TMEM155Q4W5P6 130 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 ASRGL1Q7L266 308 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 LRRC28Q86X40 367 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-206ENST00000579558 KLHL36Q8N4N3 616 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 ZNF454Q8N9F8 522 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 THEM6Q8WUY1 208 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 PRRG3Q9BZD7 231 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 SLC22A4Q9H015 551 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 SP140LQ9H930 580 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 DNAJC27Q9NZQ0 273 aa20.12■□□□□ 0.81
SHMT1-206ENST00000579558 CUBNO60494 3623 aa20.11■□□□□ 0.81
SHMT1-206ENST00000579558 FAHD2BQ6P2I3 314 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-206ENST00000579558 CCDC121Q6ZUS5 278 aa20.11■□□□□ 0.81
SHMT1-206ENST00000579558 RHOUQ7L0Q8 258 aa20.11■□□□□ 0.81
SHMT1-206ENST00000579558 CELF2-AS1Q8N7Q2 184 aa20.11■□□□□ 0.81
SHMT1-206ENST00000579558 FAHD2AQ96GK7 314 aa20.11■□□□□ 0.81
SHMT1-206ENST00000579558 ADAT1Q9BUB4 502 aaKnown RBP20.11■□□□□ 0.81
SHMT1-206ENST00000579558 GABARAPL1Q9H0R8 117 aa20.11■□□□□ 0.81
SHMT1-206ENST00000579558 G6PC2Q9NQR9 355 aa20.11■□□□□ 0.81
SHMT1-206ENST00000579558 SVEP1Q4LDE5 3571 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 LRRC30A6NM36 301 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 CYB5R3P00387 301 aaPredicted RBP20.1■□□□□ 0.81
SHMT1-206ENST00000579558 PNPP00491 289 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 THBS2P35442 1172 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 MDH2P40926 338 aaKnown RBP20.1■□□□□ 0.81
SHMT1-206ENST00000579558 CD200P41217 278 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 ZNF121P58317 390 aaPredicted RBP20.1■□□□□ 0.81
SHMT1-206ENST00000579558 MAB21L1Q13394 359 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 TIGD6Q17RP2 521 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 KDM4DQ6B0I6 523 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 FAM57BQ71RH2 274 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 HIST2H2ABQ8IUE6 130 aaPredicted RBP20.1■□□□□ 0.81
SHMT1-206ENST00000579558 OR56B2PQ8NGI1 322 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 SPSB4Q96A44 273 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 BRD7Q9NPI1 651 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms