RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PEAR1Q5VY43 1037 aaPredicted RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 AGBL5Q8NDL9 886 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 OR13C9Q8NGT0 318 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 CCDC107Q8WV48 283 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 TNFAIP8L1Q8WVP5 186 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 MR1Q95460 341 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 NKD1Q969G9 470 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 FAM46BQ96A09 425 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 EDEM2Q9BV94 578 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 ANGPTL4Q9BY76 406 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 FBLN5Q9UBX5 448 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 PTRH2Q9Y3E5 179 aaKnown RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 MAB21L2Q9Y586 359 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 TNRC18O15417 2968 aaPredicted RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 HMSDA8MTL9 139 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 H3BUI4 141 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 GOSR2O14653 212 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 RER1O15258 196 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 ERCC1P07992 297 aaPredicted RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 OR4E1P0C645 316 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 CCL4P13236 92 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 ZNF35P13682 527 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 PRKXP51817 358 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 ZNF121P58317 390 aaPredicted RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 SEC61A1P61619 476 aaKnown RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 OC90Q02509 493 aaPredicted RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 ZFP36L1Q07352 338 aaKnown RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 POU4F3Q15319 338 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 CHMP1BQ7LBR1 199 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 ZNF584Q8IVC4 421 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 OR8B12Q8NGG6 310 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 ANGPTL6Q8NI99 470 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 M1APQ8TC57 530 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 NTNG2Q96CW9 530 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 ATPIF1Q9UII2 106 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 HS3ST3B1Q9Y662 390 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 C19orf67A6NJJ6 358 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 OR6C65A6NJZ3 312 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 PATE3B3GLJ2 98 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 C9J4A7 227 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 TLX3O43711 291 aaPredicted RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 SCGNO76038 276 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 CCL3P10147 92 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ZNF20P17024 532 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ZNF93P35789 620 aaPredicted RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 CLDN17P56750 224 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 MC2RQ01718 297 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 MEF2DQ14814 521 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 CDNFQ49AH0 187 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 DCAF12L2Q5VW00 463 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 FJX1Q86VR8 437 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ANGPTL5Q86XS5 388 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 BPIFB2Q8N4F0 458 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 OR4S1Q8NGB4 309 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ASB13Q8WXK3 278 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 CMBLQ96DG6 245 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 SFXN2Q96NB2 322 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 SLC6A7Q99884 636 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 PROK2Q9HC23 129 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ZNF319Q9P2F9 582 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 TRIOBPQ9H2D6 2365 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 OR14I1A6ND48 311 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 TMEM14DPA8MWL7 114 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 PDGFBP01127 241 aaPredicted RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 SLC2A1P11166 492 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ABOP16442 354 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ZNF17P17021 662 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 CCL1P22362 96 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 GSK3AP49840 483 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 DUSP3P51452 185 aaPredicted RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 ATPAF1Q5TC12 328 aaPredicted RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 PGAP1Q75T13 922 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 ABHD12BQ7Z5M8 362 aaPredicted RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 TRAPPC6BQ86SZ2 158 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 OR5AS1Q8N127 324 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 OR13C8Q8NGS7 320 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 PAQR8Q8TEZ7 354 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 GNRHR2Q96P88 292 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 NUDT16L1Q9BRJ7 211 aaKnown RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 SOX7Q9BT81 388 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 SH2D2AQ9NP31 389 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 GPR84Q9NQS5 396 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 SLC2A8Q9NY64 477 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 GLTPQ9NZD2 209 aa8.91□□□□□ -0.98
VPS53-220ENST00000576149 FARSAQ9Y285 508 aaKnown RBP8.91□□□□□ -0.98
VPS53-220ENST00000576149 TEX51A0A1B0GUA7 166 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 DISC1C4P0D8 188 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 ZIC3O60481 467 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 NR2C1P13056 603 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 LIFP15018 202 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 ANOS1P23352 680 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 MPZP25189 248 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 CX3CR1P49238 355 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 SSR4P51571 173 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 DSCR4P56555 118 aaPredicted RBP8.9□□□□□ -0.98
VPS53-220ENST00000576149 LSM6P62312 80 aaKnown RBP8.9□□□□□ -0.98
VPS53-220ENST00000576149 GRB2P62993 217 aaKnown RBP8.9□□□□□ -0.98
VPS53-220ENST00000576149 AWAT2Q6E213 333 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 TMED4Q7Z7H5 227 aa8.9□□□□□ -0.98
VPS53-220ENST00000576149 COMMD2Q86X83 199 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms