RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 Q6ZRG5 221 aa13.83□□□□□ -0.19
CIITA-204ENST00000570546 KMT5CQ86Y97 462 aa13.83□□□□□ -0.19
CIITA-204ENST00000570546 MRPL41Q8IXM3 137 aaKnown RBP13.83□□□□□ -0.19
CIITA-204ENST00000570546 ETFBKMTQ8IXQ9 262 aa13.83□□□□□ -0.19
CIITA-204ENST00000570546 GFOD1Q9NXC2 390 aa13.83□□□□□ -0.19
CIITA-204ENST00000570546 DEGS1O15121 323 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 ACSM4P0C7M7 580 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 SLC6A1P30531 599 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 OPRM1P35372 400 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 NDUFA6P56556 154 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 HIST2H3AQ71DI3 136 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 IFI44Q8TCB0 444 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 C4orf45Q96LM5 186 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 C19orf12Q9NSK7 152 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 MTFP1Q9UDX5 166 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 IGHV3-15A0A0B4J1V0 119 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 NRASP01111 189 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 RPA2P15927 270 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 CBR1P16152 277 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 ZP3P21754 424 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 CDAP32320 146 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 PTGER4P35408 488 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 ZNF141Q15928 474 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 MRM1Q6IN84 353 aaKnown RBP13.83□□□□□ -0.2
CIITA-204ENST00000570546 ZNF425Q6IV72 752 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 SYT13Q7L8C5 426 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 APH1AQ96BI3 265 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 HOXC4P09017 264 aaPredicted RBP13.83□□□□□ -0.2
CIITA-204ENST00000570546 IFITM3Q01628 133 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 SHBQ15464 509 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 TOMM34Q15785 309 aaPredicted RBP13.83□□□□□ -0.2
CIITA-204ENST00000570546 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.83□□□□□ -0.2
CIITA-204ENST00000570546 ARL5BQ96KC2 179 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 AP1S3Q96PC3 154 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 KCNJ15Q99712 375 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 C12orf49Q9H741 205 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 GNG12Q9UBI6 72 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 PLXNB2O15031 1838 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 SCGB2A1O75556 95 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 ADRA2CP18825 462 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 HOXA1P49639 335 aaPredicted RBP13.83□□□□□ -0.2
CIITA-204ENST00000570546 PNLIPRP3Q17RR3 467 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 OR52W1Q6IF63 320 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 LANCL3Q6ZV70 420 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 C2CD4CQ8TF44 421 aa13.83□□□□□ -0.2
CIITA-204ENST00000570546 A0A1B0GTH9 108 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 CTAG2O75638 210 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 ABCD3P28288 659 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 PLGLAQ15195 96 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 TRIM61Q5EBN2 209 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 ARHGEF39Q8N4T4 335 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 SPICQ8N5J4 248 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 ZNF784Q8NCA9 323 aaPredicted RBP13.82□□□□□ -0.2
CIITA-204ENST00000570546 OR51H1Q8NH63 302 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 FAM221AA4D161 298 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 H2AFB1P0C5Y9 115 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 GLULP15104 373 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 KITLGP21583 273 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 CASP6P55212 293 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 OR4A16Q8NH70 328 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 PHF7Q9BWX1 381 aaPredicted RBP13.82□□□□□ -0.2
CIITA-204ENST00000570546 PLK3Q9H4B4 646 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 PLEKHF2Q9H8W4 249 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 ZFP92A6NM28 416 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 OR5H8P0DN80 308 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 TBC1D28Q2M2D7 210 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 ANKRD16Q6P6B7 361 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 ZNF610Q8N9Z0 462 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 PLEKHA2Q9HB19 425 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 SPACA1Q9HBV2 294 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 SLCO1B1Q9Y6L6 691 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 A0A1W2PPV9 198 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 E5RGE8 158 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 CTXN2P0C2S0 81 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 HLXQ14774 488 aaPredicted RBP13.82□□□□□ -0.2
CIITA-204ENST00000570546 TAF9Q16594 264 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 MUC20Q8N307 709 aaPredicted RBP13.82□□□□□ -0.2
CIITA-204ENST00000570546 POC1BQ8TC44 478 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 HAO2Q9NYQ3 351 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 B3GAT1Q9P2W7 334 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 GHRLQ9UBU3 117 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 AK3Q9UIJ7 227 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 NSG2Q9Y328 171 aa13.82□□□□□ -0.2
CIITA-204ENST00000570546 LRP3O75074 770 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 ZNF79Q15937 498 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.81□□□□□ -0.2
CIITA-204ENST00000570546 TCTN1Q2MV58 587 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 TTC9Q92623 222 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 C10orf90Q96M02 699 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 STRAPQ9Y3F4 350 aaKnown RBP13.81□□□□□ -0.2
CIITA-204ENST00000570546 TNFSF11O14788 317 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 AVPR2P30518 371 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 C9orf50Q5SZB4 431 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 GPBAR1Q8TDU6 330 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 GPX8Q8TED1 209 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 ZC3HAV1LQ96H79 300 aaKnown RBP13.81□□□□□ -0.2
CIITA-204ENST00000570546 THOC3Q96J01 351 aaKnown RBP13.81□□□□□ -0.2
CIITA-204ENST00000570546 ANKRD20A5PA0PJZ0 165 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 UMAD1C9J7I0 102 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 SCAND1P57086 179 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms