RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MBNL2Q5VZF2 373 aaKnown RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 KCTD18Q6PI47 426 aaPredicted RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 FBXW12Q6X9E4 464 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 Q6ZR03 302 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 KRT74Q7RTS7 529 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 ZNF786Q8N393 782 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 NANOGP1Q8N7R0 232 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 PLPP7Q8NBV4 271 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 ZNF540Q8NDQ6 660 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 OR1J1Q8NGS3 322 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 RGP1Q92546 391 aaPredicted RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 SPTSSAQ969W0 71 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 APOBEC3DQ96AK3 386 aaPredicted RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 C4orf36Q96KX1 117 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 TRAF4Q9BUZ4 470 aaPredicted RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 REPIN1Q9BWE0 567 aaKnown RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 PLK3Q9H4B4 646 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 PPP1R3EQ9H7J1 279 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 NIPAL2Q9H841 368 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 NUFIP1Q9UHK0 495 aaKnown RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 ST6GALNAC2Q9UJ37 374 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 IKZF2Q9UKS7 526 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 FZR1Q9UM11 496 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 SLC22A13Q9Y226 551 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 PCDHGB1Q9Y5G3 927 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 ATP23Q9Y6H3 246 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 R4GMQ9 66 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 ABCA2Q9BZC7 2435 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 hCG_38984A0A1B0GV85 526 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 TRIM64CA6NLI5 447 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 PTGES3LE9PB15 166 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 ATE1O95260 518 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 IGHV3-13P01766 116 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 LCATP04180 440 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 OR4A8P0C604 315 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 KITLGP21583 273 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 PCMT1P22061 227 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 CCL1P22362 96 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 ACKR3P25106 362 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 APOBEC3AP31941 199 aaPredicted RBP7.94□□□□□ -1.14
VPS35-211ENST00000569950 ATP6V1E1P36543 226 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 RGS6P49758 472 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 RIDAP52758 137 aaKnown RBP7.94□□□□□ -1.14
VPS35-211ENST00000569950 CDH15P55291 814 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 FAM3AP98173 230 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 MED21Q13503 144 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 SPRNQ5BIV9 151 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 RBM48Q5RL73 367 aaKnown RBP7.94□□□□□ -1.14
VPS35-211ENST00000569950 ZNF544Q6NX49 715 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 VHLLQ6RSH7 139 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 PAMR1Q6UXH9 720 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 FAM57BQ71RH2 274 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 PRSS48Q7RTY5 328 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 EGFL6Q8IUX8 553 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 ELMOD2Q8IZ81 293 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 ZNF283Q8N7M2 679 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 OR2G2Q8NGZ5 317 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 OR10AC1Q8NH08 325 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 OR52N1Q8NH53 320 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 SPRYD4Q8WW59 207 aaPredicted RBP7.94□□□□□ -1.14
VPS35-211ENST00000569950 FBXW5Q969U6 566 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 HAVCR1Q96D42 359 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 CMBLQ96DG6 245 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 OR5M11Q96RB7 305 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 MROQ9BYG7 248 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 BCL2L14Q9BZR8 327 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 FGF23Q9GZV9 251 aaPredicted RBP7.94□□□□□ -1.14
VPS35-211ENST00000569950 PBOV1Q9GZY1 135 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 PTTG3PQ9NZH4 202 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 FRRS1LQ9P0K9 344 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 GNG8Q9UK08 70 aa7.94□□□□□ -1.14
VPS35-211ENST00000569950 CAB39Q9Y376 341 aaPredicted RBP7.94□□□□□ -1.14
VPS35-211ENST00000569950 EXOSC1Q9Y3B2 195 aaKnown RBP7.94□□□□□ -1.14
VPS35-211ENST00000569950 A0A0U1RQV5 110 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 TMEM269A0A1B0GVZ9 245 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 IRGMA1A4Y4 181 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 ZSCAN5BA6NJL1 495 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 ACOD1A6NK06 481 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 H3BSA7 217 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 J3QLW9 94 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 OGG1O15527 345 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 LMX1BO60663 402 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 RPP14O95059 124 aaKnown RBP7.93□□□□□ -1.14
VPS35-211ENST00000569950 KRT8P05787 483 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 LCKP06239 509 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 RAC2P15153 192 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 ZNF19P17023 458 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 HSD11B1P28845 292 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 SERPINF1P36955 418 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 RAD52P43351 418 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 MAP2K4P45985 399 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 SLC6A9P48067 706 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 FABP6P51161 128 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 GABARAPL2P60520 117 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 RPS11P62280 158 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS35-211ENST00000569950 ACTA2P62736 377 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 ACTG2P63267 376 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 HNRNPA0Q13151 305 aaKnown RBP7.93□□□□□ -1.14
VPS35-211ENST00000569950 OR8B8Q15620 311 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 KCTD21Q4G0X4 260 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms