RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 GPR157Q5UAW9 335 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 PGAP1Q75T13 922 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 OR2AJ1Q8NGZ0 328 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 SLCO4A1Q96BD0 722 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 FN3KQ9H479 309 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 GORASP2Q9H8Y8 452 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 UFSP2Q9NUQ7 469 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 TMCC3Q9ULS5 477 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 OR6C68A6NDL8 312 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 SRRM5B3KS81 715 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 ENSAO43768 121 aaKnown RBP12.41□□□□□ -0.42
CLN3-228ENST00000567804 GADD45GO95257 159 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 SEMG1P04279 462 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 CALB2P22676 271 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 OMGP23515 440 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 NPY4RP50391 375 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 TPTEP56180 551 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 BPIFB3P59826 476 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 HOXA4Q00056 320 aaPredicted RBP12.41□□□□□ -0.42
CLN3-228ENST00000567804 SPIBQ01892 262 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 SDR9C7Q8NEX9 313 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 SPRYD4Q8WW59 207 aaPredicted RBP12.41□□□□□ -0.42
CLN3-228ENST00000567804 ZDHHC16Q969W1 377 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 MAP6Q96JE9 813 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 IFT27Q9BW83 186 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 MRPL22Q9NWU5 206 aaKnown RBP12.41□□□□□ -0.42
CLN3-228ENST00000567804 NDE1Q9NXR1 346 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 RNF7Q9UBF6 113 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 CTSZQ9UBR2 303 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 MAGEL2Q9UJ55 1249 aa12.41□□□□□ -0.42
CLN3-228ENST00000567804 TGP01266 2768 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 A0A1B0GUS0 222 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 FAM181BA6NEQ2 426 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 M0R135 149 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 OR10H3O60404 316 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 PTBP3O95758 552 aaKnown RBP12.4□□□□□ -0.42
CLN3-228ENST00000567804 HLA-DQA2P01906 255 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 ATP6V1B2P21281 511 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 CA6P23280 308 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 NOS3P29474 1203 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 MNAT1P51948 309 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 SMIM11AP58511 58 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 OR8G1Q15617 311 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 RUSC1-AS1Q66K80 236 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 Q6YL49 198 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 TRPM8Q7Z2W7 1104 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 MRPL21Q7Z2W9 205 aaKnown RBP12.4□□□□□ -0.42
CLN3-228ENST00000567804 ZNF799Q96GE5 643 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 TECTBQ96PL2 329 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 PCGF1Q9BSM1 259 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 ADAT1Q9BUB4 502 aaKnown RBP12.4□□□□□ -0.42
CLN3-228ENST00000567804 SLC22A4Q9H015 551 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 FN3KRPQ9HA64 309 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 NOX4Q9NPH5 578 aa12.4□□□□□ -0.42
CLN3-228ENST00000567804 NOP16Q9Y3C1 178 aaKnown RBP12.4□□□□□ -0.42
CLN3-228ENST00000567804 CD300LBA8K4G0 201 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 LGALS8O00214 317 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 IDH3BO43837 385 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 GMNNO75496 209 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 SFTPBP07988 381 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 ANOS1P23352 680 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 CFHR2P36980 270 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 GSSP48637 474 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 DEFA6Q01524 100 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.39□□□□□ -0.43
CLN3-228ENST00000567804 KCNJ8Q15842 424 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 SNAI3Q3KNW1 292 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 PDLIM3Q53GG5 364 aaPredicted RBP12.39□□□□□ -0.43
CLN3-228ENST00000567804 CD276Q5ZPR3 534 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 SFRP4Q6FHJ7 346 aaPredicted RBP12.39□□□□□ -0.43
CLN3-228ENST00000567804 FIP1L1Q6UN15 594 aaKnown RBP12.39□□□□□ -0.43
CLN3-228ENST00000567804 CYP2R1Q6VVX0 501 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 ZNF620Q6ZNG0 422 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 OR2AE1Q8NHA4 323 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 WFDC12Q8WWY7 111 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 SPTSSAQ969W0 71 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 PYURFQ96I23 114 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 CLPTM1LQ96KA5 538 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 NSMCE2Q96MF7 247 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 TBX15Q96SF7 602 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 MMADHCQ9H3L0 296 aaPredicted RBP12.39□□□□□ -0.43
CLN3-228ENST00000567804 MARCH7Q9H992 704 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 TNFRSF19Q9NS68 423 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 TAS2R1Q9NYW7 299 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 ERVK-18Q9QC07 812 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 KCNG2Q9UJ96 466 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 VWFP04275 2813 aa12.39□□□□□ -0.43
CLN3-228ENST00000567804 PRKDCP78527 4128 aaKnown RBP12.39□□□□□ -0.43
CLN3-228ENST00000567804 ZNF879B4DU55 563 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 P2RY10O00398 339 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 TNFRSF13BO14836 293 aaPredicted RBP12.38□□□□□ -0.43
CLN3-228ENST00000567804 GMDSO60547 372 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 KNG1P01042 644 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 MELTFP08582 738 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 MMP9P14780 707 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 OTX1P32242 354 aaPredicted RBP12.38□□□□□ -0.43
CLN3-228ENST00000567804 RPS27P42677 84 aaKnown RBP12.38□□□□□ -0.43
CLN3-228ENST00000567804 RAG2P55895 527 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 MS4A2Q01362 244 aa12.38□□□□□ -0.43
CLN3-228ENST00000567804 ZNF92Q03936 586 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms