RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.53□□□□□ -1.52
CLN3-223ENST00000566472 HPF1Q9NWY4 346 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ASH2LQ9UBL3 628 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 MRPS28Q9Y2Q9 187 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 MRPS18CQ9Y3D5 142 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 V9GYS6 101 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 EML5Q05BV3 1969 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 SPAG17Q6Q759 2223 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CEP192Q8TEP8 1941 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 TEX51A0A1B0GUA7 166 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 A0A1B0GW55 424 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR14I1A6ND48 311 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 MEIS3P1A6NDR6 274 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 TMEM235A6NFC5 223 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DHRS7CA6NNS2 312 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 ZNF814B7Z6K7 855 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 SHOXO15266 292 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DHHO43323 396 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CDC14BO60729 498 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 MTRF1O75570 445 aaKnown RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 DHRS3O75911 302 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 HPP00738 406 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CD8AP01732 235 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DUX4L2P0CJ85 424 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DUX4L3P0CJ86 424 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DUX4L4P0CJ87 422 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DUX4L5P0CJ88 424 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DUX4L6P0CJ89 424 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DUX4L7P0CJ90 424 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CCL3P10147 92 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 SLC25A4P12235 298 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 HIST1H1DP16402 221 aaKnown RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 ZNF24P17028 368 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CXCL2P19875 107 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 ACP1P24666 158 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CD34P28906 385 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 SSTR2P30874 369 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CALCRP30988 508 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 S100A11P31949 105 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OTX1P32242 354 aaPredicted RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 CASRP41180 1078 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 PRKXP51817 358 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 MRPS34P82930 218 aaKnown RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 ZXDAP98168 799 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 ECH1Q13011 328 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 ENDOGQ14249 297 aaKnown RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 INPP5JQ15735 1006 aaPredicted RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 MOGAT2Q3SYC2 334 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CDNFQ49AH0 187 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 PRAMEF20Q5VT98 475 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 RAET1LQ5VY80 246 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CARD17Q5XLA6 110 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 NSUN5P2Q63ZY6 315 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 LIN54Q6MZP7 749 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 TMEM65Q6PI78 240 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 GLIPR1L1Q6UWM5 242 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 C3P1Q6ZMU1 363 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CHMP1BQ7LBR1 199 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 ABHD12BQ7Z5M8 362 aaPredicted RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 LYG2Q86SG7 212 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 NAA40Q86UY6 237 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 SLC25A42Q86VD7 318 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 C20orf196Q8IYI0 205 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR8H3Q8N146 312 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 BEST3Q8N1M1 668 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 ARRDC1Q8N5I2 433 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 TMEM156Q8N614 296 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 PNLDC1Q8NA58 520 aaKnown RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 CHST4Q8NCG5 386 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 STEAP2Q8NFT2 490 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR9K2Q8NGE7 335 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR56B1Q8NGI3 324 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR5M8Q8NGP6 311 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR5M1Q8NGP8 315 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR13C8Q8NGS7 320 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 OR8S1Q8NH09 359 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 MAFAQ8NHW3 353 aaPredicted RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 PP6455Q8WZ26 134 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DVL3Q92997 716 aaPredicted RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 SPTSSAQ969W0 71 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 NABP1Q96AH0 204 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CPNE2Q96FN4 548 aaPredicted RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 PGAM5Q96HS1 289 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 C1orf147Q96MC9 270 aaPredicted RBP5.52□□□□□ -1.53
CLN3-223ENST00000566472 SFXN2Q96NB2 322 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 SCGB3A2Q96PL1 93 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 ZNF416Q9BWM5 594 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 TMEM59Q9BXS4 323 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 FAM117AQ9C073 453 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 B3GNT4Q9C0J1 378 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CST11Q9H112 138 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 LPAR5Q9H1C0 372 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 CDCP1Q9H5V8 836 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 PROK2Q9HC23 129 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 GPR84Q9NQS5 396 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 FSCN3Q9NQT6 498 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 SLC39A1Q9NY26 324 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 DUX4Q9UBX2 424 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 KCNN3Q9UGI6 736 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 FOXD3Q9UJU5 478 aaPredicted RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms