RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ECHDC1Q9NTX5 307 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 PAK1IP1Q9NWT1 392 aaPredicted RBP4.45□□□□□ -1.7
VPS35-205ENST00000563984 ABI3Q9P2A4 366 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 RALYQ9UKM9 306 aaKnown RBP4.45□□□□□ -1.7
VPS35-205ENST00000563984 A4GNTQ9UNA3 340 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 SLC17A4Q9Y2C5 497 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 MRPS28Q9Y2Q9 187 aaKnown RBP4.45□□□□□ -1.7
VPS35-205ENST00000563984 WDR45Q9Y484 360 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 LTBP4Q8N2S1 1624 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 TRPM1Q7Z4N2 1603 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 TRAV30A0A087WSZ9 112 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 TRAV39A0A0B4J263 110 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 A0A1W2PRF3 423 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 A0A1W2PRM7 423 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 TMEM218A2RU14 115 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 FAM74A7A6NL05 159 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 H0YGN5 161 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 ARPC1BO15143 372 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 ERI3O43414 337 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 PPIHO43447 177 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 SOX15O60248 233 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 ENTPD6O75354 484 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 NKX2-2O95096 273 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 VENTXO95231 258 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 MPZL1O95297 269 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 FGF19O95750 216 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 LALBAP00709 142 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 JCHAINP01591 159 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 TYMSP04818 313 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 IFNW1P05000 195 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CD2P06729 351 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 UCHL1P09936 223 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 OR56A5P0C7T3 313 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CD37P11049 281 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 LIPCP11150 499 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 UGT2B7P16662 529 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 ZBTB25P24278 435 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 OPRL1P41146 370 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 GYG1P46976 350 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CDX1P47902 265 aaPredicted RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 CCL11P51671 97 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 ADORA2A-AS1P86434 159 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 PAX2Q02962 417 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 C2orf80Q0P641 193 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 ITPK1Q13572 414 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 GK3PQ14409 553 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 SYPL1Q16563 259 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 FAM74A3Q4VXF1 159 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CARD16Q5EG05 197 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 PYY3Q5JQD4 70 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 HENMT1Q5T8I9 393 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 TMEM198Q66K66 360 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 UQCC3Q6UW78 93 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 PARM1Q6UWI2 310 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 DOLPP1Q86YN1 238 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 SNX29P2Q8IUI4 249 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 APOBEC3FQ8IUX4 373 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 H1FOOQ8IZA3 346 aaPredicted RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 LYG1Q8N1E2 194 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 SVBPQ8N300 66 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 C11orf42Q8N5U0 333 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 SLC30A7Q8NEW0 376 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 OR51S1Q8NGJ8 323 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 OR2Y1Q8NGV0 311 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 OR6K2Q8NGY2 324 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 OR2AE1Q8NHA4 323 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CLEC4CQ8WTT0 213 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 TMEM159Q96B96 161 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 ORAI1Q96D31 301 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 OR10C1Q96KK4 312 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 FCRL1Q96LA6 429 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CXorf58Q96LI9 332 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 MYADMQ96S97 322 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 TBX5Q99593 518 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CDCA4Q9BXL8 241 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CST9LQ9H4G1 147 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 MAP6D1Q9H9H5 199 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 CXorf21Q9HAI6 301 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 PATZ1Q9HBE1 687 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 LRTM1Q9HBL6 345 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 ZBTB20Q9HC78 741 aaPredicted RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 NOX4Q9NPH5 578 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 DUS2Q9NX74 493 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 KLRF1Q9NZS2 232 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 SS18L2Q9UHA2 77 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 DHDHQ9UQ10 334 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 PSG8Q9UQ74 426 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 AK6Q9Y3D8 172 aaKnown RBP4.44□□□□□ -1.7
VPS35-205ENST00000563984 OVOS2A0A0G2JMS6 1433 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 MYH3P11055 1940 aa4.44□□□□□ -1.7
VPS35-205ENST00000563984 LAMC1P11047 1609 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 STRCQ7RTU9 1775 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 LRRC7Q96NW7 1537 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 DUOX2Q9NRD8 1548 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 MYH1P12882 1939 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 MYH6P13533 1939 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ITSN2Q9NZM3 1697 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 A0A087X0K7 114 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 PPIAL4CA0A0B4J2A2 164 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 KIR2DL5BA0A0G2JN68 375 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms