RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 ZNF404Q494X3 552 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 FAM98BQ52LJ0 330 aaKnown RBP10.54□□□□□ -0.72
SNX1-209ENST00000559961 AWAT1Q58HT5 328 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 GPR157Q5UAW9 335 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 PGBD2Q6P3X8 592 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 COLCA1Q6ZS62 124 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 RASSF6Q6ZTQ3 369 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 DHFR2Q86XF0 187 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 ARHGAP24Q8N264 748 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 PARP8Q8N3A8 854 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 PLPP7Q8NBV4 271 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 OR8S1Q8NH09 359 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 Q8TCH9 128 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 DVL3Q92997 716 aaPredicted RBP10.54□□□□□ -0.72
SNX1-209ENST00000559961 TECTBQ96PL2 329 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 NUDT16L1Q9BRJ7 211 aaKnown RBP10.54□□□□□ -0.72
SNX1-209ENST00000559961 ADAT1Q9BUB4 502 aaKnown RBP10.54□□□□□ -0.72
SNX1-209ENST00000559961 TSSK6Q9BXA6 273 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 TEX12Q9BXU0 123 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 MUC13Q9H3R2 512 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 FN3KQ9H479 309 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 CD300AQ9UGN4 299 aa10.54□□□□□ -0.72
SNX1-209ENST00000559961 KIR2DS1A0A191URI9 304 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 hCG_1807616A0A1W2PRN6 198 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 TVP23AA6NH52 213 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 A6NLC8 198 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 MLNRO43193 412 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 XRCC2O43543 280 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 ENSAO43768 121 aaKnown RBP10.53□□□□□ -0.72
SNX1-209ENST00000559961 SEMG1P04279 462 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 LIPFP07098 398 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 HKR1P10072 659 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 ZNF3P17036 446 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 PAICSP22234 425 aaKnown RBP10.53□□□□□ -0.72
SNX1-209ENST00000559961 CD80P33681 288 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 DDOSTP39656 456 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 ENTPD1P49961 510 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 HMGA2P52926 109 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 GRB2P62993 217 aaKnown RBP10.53□□□□□ -0.72
SNX1-209ENST00000559961 IL13RA1P78552 427 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 TIGD6Q17RP2 521 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 CYP2R1Q6VVX0 501 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 DCXRQ7Z4W1 244 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 FTMTQ8N4E7 242 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 PNLDC1Q8NA58 520 aaKnown RBP10.53□□□□□ -0.72
SNX1-209ENST00000559961 CYB561A3Q8NBI2 242 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 OR2T33Q8NG76 320 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 OR6K6Q8NGW6 343 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 OTULINQ96BN8 352 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 KCNJ15Q99712 375 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 EGLN3Q9H6Z9 239 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 IL20Q9NYY1 176 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 MRPL15Q9P015 296 aaKnown RBP10.53□□□□□ -0.72
SNX1-209ENST00000559961 ACTR3BQ9P1U1 418 aa10.53□□□□□ -0.72
SNX1-209ENST00000559961 SAMHD1Q9Y3Z3 626 aaKnown RBP10.53□□□□□ -0.72
SNX1-209ENST00000559961 IGHV3OR16-10A0A075B7F0 116 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 DNAJC9-AS1A6NH13 148 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 POM121CA8CG34 1229 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 B2RBV5 119 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 ZNF878C9JN71 531 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 LGALS8O00214 317 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 ZNF593O00488 134 aaPredicted RBP10.52□□□□□ -0.73
SNX1-209ENST00000559961 BHLHE40O14503 412 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 GNGT2O14610 69 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 TBX1O43435 398 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 FAM20BO75063 409 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 GASTP01350 101 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 ANXA2P07355 339 aaKnown RBP10.52□□□□□ -0.73
SNX1-209ENST00000559961 GRPP07492 148 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 CFL1P23528 166 aaKnown RBP10.52□□□□□ -0.73
SNX1-209ENST00000559961 GNALP38405 381 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 PRKXP51817 358 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 NAA40Q86UY6 237 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.52□□□□□ -0.73
SNX1-209ENST00000559961 LNX2Q8N448 690 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 AQP11Q8NBQ7 271 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 OR51L1Q8NGJ5 315 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 TEX47Q8TBZ9 253 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 DUX5Q96PT3 197 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 TOR3AQ9H497 397 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 MAGIXQ9H6Y5 334 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 ESM1Q9NQ30 184 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 ARL8BQ9NVJ2 186 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 PCDHGB1Q9Y5G3 927 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 LYVE1Q9Y5Y7 322 aa10.52□□□□□ -0.73
SNX1-209ENST00000559961 TRAV40A0A0B4J280 105 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 H3BN98 237 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 CLDN34H7C241 214 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 ADAM20O43506 726 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 RNASE1P07998 156 aaKnown RBP10.51□□□□□ -0.73
SNX1-209ENST00000559961 NAA10P41227 235 aaPredicted RBP10.51□□□□□ -0.73
SNX1-209ENST00000559961 MAB21L1Q13394 359 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 EIF2B1Q14232 305 aaKnown RBP10.51□□□□□ -0.73
SNX1-209ENST00000559961 GK3PQ14409 553 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 MICAQ29983 383 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 RSPO1Q2MKA7 263 aaPredicted RBP10.51□□□□□ -0.73
SNX1-209ENST00000559961 KRTAP27-1Q3LI81 207 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 METTL11BQ5VVY1 283 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 PRAMEF6Q5VXH4 476 aa10.51□□□□□ -0.73
SNX1-209ENST00000559961 WDR25Q64LD2 544 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms