RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 GFOD2Q3B7J2 385 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 SNAI3Q3KNW1 292 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 TP53I3Q53FA7 332 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 C6orf141Q5SZD1 244 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 FBXW12Q6X9E4 464 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 AHSA2Q719I0 299 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 COMMD2Q86X83 199 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 MYDGFQ969H8 173 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 CMBLQ96DG6 245 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 REEP6Q96HR9 211 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 CACNG6Q9BXT2 260 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 RAB1BQ9H0U4 201 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 BARX1Q9HBU1 254 aaPredicted RBP8.65□□□□□ -1.02
USP3-216ENST00000559873 FAM206AQ9NX38 181 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 ERVK13-1Q9NX77 482 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 NUFIP1Q9UHK0 495 aaKnown RBP8.65□□□□□ -1.02
USP3-216ENST00000559873 MRM2Q9UI43 246 aaKnown RBP8.65□□□□□ -1.02
USP3-216ENST00000559873 PSORS1C1Q9UIG5 152 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 MYRFQ9Y2G1 1151 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 STARD10Q9Y365 291 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 RTTNQ86VV8 2226 aa8.65□□□□□ -1.03
USP3-216ENST00000559873 SETXQ7Z333 2677 aaKnown RBP8.64□□□□□ -1.03
USP3-216ENST00000559873 CACNA1DQ01668 2161 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 GGT3PA6NGU5 568 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 PRR32B1ATL7 298 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 H7C417 338 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 XPNPEP2O43895 674 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 RPP14O95059 124 aaKnown RBP8.64□□□□□ -1.03
USP3-216ENST00000559873 HTR1AP08908 422 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 CD53P19397 219 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 DDOSTP39656 456 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 ST3GAL4Q11206 333 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 GK2Q14410 553 aaPredicted RBP8.64□□□□□ -1.03
USP3-216ENST00000559873 SWI5Q1ZZU3 235 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 DEFB113Q30KQ7 82 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 PCGF3Q3KNV8 242 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 RBM48Q5RL73 367 aaKnown RBP8.64□□□□□ -1.03
USP3-216ENST00000559873 GLYATL3Q5SZD4 288 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 ZNF684Q5T5D7 378 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 LIPNQ5VXI9 398 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 C11orf71Q6IPW1 123 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 SSX6Q7RTT6 188 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 LRRC75A-AS1Q8N1F1 130 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 ZNF786Q8N393 782 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 KLHL36Q8N4N3 616 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 OR8B12Q8NGG6 310 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 SPRYD4Q8WW59 207 aaPredicted RBP8.64□□□□□ -1.03
USP3-216ENST00000559873 NRGNQ92686 78 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 GGHQ92820 318 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 MBD6Q96DN6 1003 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 C4orf36Q96KX1 117 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 DIRC2Q96SL1 478 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 PBOV1Q9GZY1 135 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 SLC22A4Q9H015 551 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 BRD7Q9NPI1 651 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 ACOXLQ9NUZ1 547 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 TAAR3PQ9P1P4 343 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 PURGQ9UJV8 347 aaKnown RBP8.64□□□□□ -1.03
USP3-216ENST00000559873 FZR1Q9UM11 496 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 ERGIC3Q9Y282 383 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 CAB39Q9Y376 341 aaPredicted RBP8.64□□□□□ -1.03
USP3-216ENST00000559873 DSCAMO60469 2012 aa8.64□□□□□ -1.03
USP3-216ENST00000559873 ITPR2Q14571 2701 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 CRYBG3Q68DQ2 2970 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 HRNRQ86YZ3 2850 aaPredicted RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 A0A0U1RQV5 110 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 TMEM129A0AVI4 362 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 IQCF6A8MYZ5 107 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 J3QLW9 94 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 RGS10O43665 173 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 MTRF1O75570 445 aaKnown RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 UBCP0CG48 685 aaKnown RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 ATP6V1B1P15313 513 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 ZNF12P17014 697 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 ZNF19P17023 458 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 TNFSF4P23510 183 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 EEF1B2P24534 225 aaKnown RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 CDKN1AP38936 164 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 MPV17P39210 176 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 GBX2P52951 348 aaPredicted RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 TAS2R43P59537 309 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 PSG7Q13046 419 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 HLXQ14774 488 aaPredicted RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 FAM209AQ5JX71 171 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 PRSS45Q7RTY3 260 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 LHFPL3Q86UP9 236 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 CCDC54Q8NEL0 328 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 CSNK2A3Q8NEV1 391 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 OR52N1Q8NH53 320 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 OR2AE1Q8NHA4 323 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 NEU4Q8WWR8 484 aaPredicted RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 SPSB4Q96A44 273 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 HAVCR1Q96D42 359 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 SIGLEC11Q96RL6 698 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 VRK1Q99986 396 aaPredicted RBP8.63□□□□□ -1.03
USP3-216ENST00000559873 GSX2Q9BZM3 304 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 LIME1Q9H400 295 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 TRIM36Q9NQ86 728 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 ZDHHC8Q9ULC8 765 aa8.63□□□□□ -1.03
USP3-216ENST00000559873 APCP25054 2843 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms