RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 LRRN3E7EW58 273 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 PSMD3O43242 534 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 SYT7O43581 403 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 NDUFS6O75380 124 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ANXA9O76027 345 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 F10P00742 488 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 TNFP01375 233 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 MBP02144 154 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 GYPCP04921 128 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 HBQ1P09105 142 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 FAM228BP0C875 321 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 C8orf89P0DMQ9 161 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 CTSEP14091 401 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RPA2P15927 270 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 NQO2P16083 231 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 CD36P16671 472 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF32P17041 273 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 GLRA1P23415 457 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 TEAD1P28347 426 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 UGT1A3P35503 534 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 PCK1P35558 622 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ACTR1BP42025 376 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 HCAR3P49019 387 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 P2RY4P51582 365 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 HNRNPFP52597 415 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 UCP2P55851 309 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 NUP107P57740 925 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RAD51Q06609 339 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 BCL2L1Q07817 233 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 MFGE8Q08431 387 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RCAN2Q14206 197 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF235Q14590 738 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 PDK2Q15119 407 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 PYCR3Q53H96 274 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 CMPK2Q5EBM0 449 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 BEX5Q5H9J7 111 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 HENMT1Q5T8I9 393 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 CCDC137Q6PK04 289 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 NHLRC1Q6VVB1 395 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 EIF3MQ7L2H7 374 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ABHD12BQ7Z5M8 362 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 TMEM135Q86UB9 458 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 PAQR7Q86WK9 346 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 C17orf64Q86WR6 236 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF547Q8IVP9 402 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 SIAH3Q8IW03 269 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 KIF2BQ8N4N8 673 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ATPAF2Q8N5M1 289 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 CCNYQ8ND76 341 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 OR9K2Q8NGE7 335 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 OR4D9Q8NGE8 314 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF564Q8TBZ8 553 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 GPX8Q8TED1 209 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 NAT14Q8WUY8 206 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ELMO1Q92556 727 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 HAS2Q92819 552 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ART4Q93070 314 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 AP2M1Q96CW1 435 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 PPP1R36Q96LQ0 422 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 C9orf72Q96LT7 481 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 SPATA13Q96N96 652 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 OR2M4Q96R27 311 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 TRIB3Q96RU7 358 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RASL10BQ96S79 203 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 LYSMD1Q96S90 227 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 NRTNQ99748 197 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RIOK2Q9BVS4 552 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 GON7Q9BXV9 100 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 MRPL13Q9BYD1 178 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 PARD6GQ9BYG4 376 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 OSBPL8Q9BZF1 889 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 YIPF3Q9GZM5 350 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 DDX47Q9H0S4 455 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ATG10Q9H0Y0 220 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 CLMPQ9H6B4 373 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RANBP3Q9H6Z4 567 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RNPEPL1Q9HAU8 725 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 MYOZ1Q9NP98 299 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 CCNB1IP1Q9NPC3 277 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 FAIMQ9NVQ4 179 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 RPS6KB2Q9UBS0 482 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 SEC14L4Q9UDX3 406 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 GPR132Q9UNW8 380 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 HYOU1Q9Y4L1 999 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 MRPS18BQ9Y676 258 aaKnown RBP3.34□□□□□ -1.87
PRPF39-209ENST00000556353 SVEP1Q4LDE5 3571 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CUBNO60494 3623 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 IGHV3OR16-12A0A075B7B8 117 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ATP6AP2A0A1C7CYW4 349 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 RAB19A4D1S5 217 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 FRG2CA6NGY1 282 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SMIM23A6NLE4 172 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF729A6NN14 1252 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 EFCAB7A8K855 629 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 KCNK1O00180 336 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SNNO75324 88 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 VPS26AO75436 327 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 KRT75O95678 551 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SNAP29O95721 258 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SLC16A8O95907 504 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms