RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ASB17Q8WXJ9 295 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 RFKQ969G6 155 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 C18orf12Q96KH6 178 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 COX4I2Q96KJ9 171 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 OR8B4Q96RC9 309 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 TBX5Q99593 518 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 REG4Q9BYZ8 158 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 MYOZ1Q9NP98 299 aaPredicted RBP12.01□□□□□ -0.49
PTCH1-226ENST00000553011 C8orf4Q9NR00 106 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 CYSLTR2Q9NS75 346 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 CLN6Q9NWW5 311 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 NKIRAS2Q9NYR9 191 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF319Q9P2F9 582 aa12.01□□□□□ -0.49
PTCH1-226ENST00000553011 CGGBP1Q9UFW8 167 aaPredicted RBP12.01□□□□□ -0.49
PTCH1-226ENST00000553011 SETD2Q9BYW2 2564 aaPredicted RBP12□□□□□ -0.49
PTCH1-226ENST00000553011 LOC390937A0A1W2PQ73 354 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 IQCF6A8MYZ5 107 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF670-ZNF695F2Z2N8 137 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 TPD52L2O43399 206 aaKnown RBP12□□□□□ -0.49
PTCH1-226ENST00000553011 CLIC3O95833 236 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 APOC1P02654 83 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 ADH4P08319 380 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 PSMA6P60900 246 aaKnown RBP12□□□□□ -0.49
PTCH1-226ENST00000553011 ROM1Q03395 351 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 SLC34A1Q06495 639 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 POU4F2Q12837 409 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 CDK5R2Q13319 367 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 TMED1Q13445 227 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 PCGF3Q3KNV8 242 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 ZMAT1Q5H9K5 638 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 MEDAGQ5VYS4 303 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF322Q6U7Q0 402 aaPredicted RBP12□□□□□ -0.49
PTCH1-226ENST00000553011 SSX6Q7RTT6 188 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF786Q8N393 782 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 OR8G5Q8NG78 346 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 CYGBQ8WWM9 190 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 YIPF5Q969M3 257 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 ELMOD3Q96FG2 381 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 PGAM5Q96HS1 289 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 MNTQ99583 582 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 APOL4Q9BPW4 351 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 REPIN1Q9BWE0 567 aaKnown RBP12□□□□□ -0.49
PTCH1-226ENST00000553011 RNPEPL1Q9HAU8 725 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 IKZF2Q9UKS7 526 aa12□□□□□ -0.49
PTCH1-226ENST00000553011 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12□□□□□ -0.49
PTCH1-226ENST00000553011 NSD1Q96L73 2696 aaPredicted RBP12□□□□□ -0.49
PTCH1-226ENST00000553011 A0A096LNT2 108 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 A0A1W2PQL4 384 aaPredicted RBP11.99□□□□□ -0.49
PTCH1-226ENST00000553011 CD300LBA8K4G0 201 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 VWC2LB2RUY7 222 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 H0YHG0 523 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 H0YL77 283 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 XRCC2O43543 280 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 CDC14BO60729 498 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 INHBBP09529 407 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 SELEP16581 610 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 ATP6V1E1P36543 226 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 MTNR1AP48039 350 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 ADARB1P78563 741 aaKnown RBP11.99□□□□□ -0.49
PTCH1-226ENST00000553011 HNRNPA0Q13151 305 aaKnown RBP11.99□□□□□ -0.49
PTCH1-226ENST00000553011 TIGD6Q17RP2 521 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 GFOD2Q3B7J2 385 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 FAM209AQ5JX71 171 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 DEGS2Q6QHC5 323 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 PLEKHG7Q6ZR37 379 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF679Q8IYX0 411 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 OR2Z1Q8NG97 314 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 OR10H4Q8NGA5 316 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 OR10AD1Q8NGE0 317 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 APH1BQ8WW43 257 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 NRG4Q8WWG1 115 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 RDH5Q92781 318 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 SGK3Q96BR1 496 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 RNFT2Q96EX2 444 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 SMR3AQ99954 134 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 PIMREGQ9BSJ6 248 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 MROQ9BYG7 248 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 OR10A2Q9H208 303 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 NIPAL2Q9H841 368 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 SP140LQ9H930 580 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 SAP30LQ9HAJ7 183 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 DECR2Q9NUI1 292 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 ZDHHC8Q9ULC8 765 aa11.99□□□□□ -0.49
PTCH1-226ENST00000553011 GGT3PA6NGU5 568 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 NDUFS8O00217 210 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 PHYHO14832 338 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 MLNRO43193 412 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 MPZL2O60487 215 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF254O75437 659 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 RP2O75695 350 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 CD55P08174 381 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 OR2T7P0C7T2 308 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 FOSL1P15407 271 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 SLC25A16P16260 332 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 RIDAP52758 137 aaKnown RBP11.98□□□□□ -0.49
PTCH1-226ENST00000553011 TNFAIP6P98066 277 aaPredicted RBP11.98□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF91Q05481 1191 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 MFGE8Q08431 387 aaPredicted RBP11.98□□□□□ -0.49
PTCH1-226ENST00000553011 RIN1Q13671 783 aa11.98□□□□□ -0.49
PTCH1-226ENST00000553011 ZNF691Q5VV52 312 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms