RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 NUBPLQ8TB37 319 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 ST7LQ8TDW4 575 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 RAB40AQ8WXH6 277 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 ASB17Q8WXJ9 295 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 SCMH1Q96GD3 660 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 CCDC120Q96HB5 630 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 HYLS1Q96M11 299 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 TMPRSS13Q9BYE2 586 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 SRXN1Q9BYN0 137 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF436Q9C0F3 470 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-215ENST00000552823 DEFB127Q9H1M4 99 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 C12orf49Q9H741 205 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 CRLF2Q9HC73 371 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 DLL4Q9NR61 685 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 PARPBPQ9NWS1 579 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF224Q9NZL3 707 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF581Q9P0T4 197 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 B3GALT5Q9Y2C3 310 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 MRPS28Q9Y2Q9 187 aaKnown RBP4.95□□□□□ -1.62
LIMA1-215ENST00000552823 CHCHD2Q9Y6H1 151 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-215ENST00000552823 CHD8Q9HCK8 2581 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 DCHS1Q96JQ0 3298 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 GTF3C1Q12789 2109 aa4.95□□□□□ -1.62
LIMA1-215ENST00000552823 PINLYPA6NC86 204 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 METTL21EPA6NDL7 271 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF878C9JN71 531 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 M0R233 179 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 XRCC3O43542 346 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TRAF3IP2O43734 574 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 AKAIN1P0CW23 69 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 COX6A1P12074 109 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 DUSP1P28562 367 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 HRH1P35367 487 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CARD18P57730 90 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 SPEM2Q0P670 501 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 SRSF6Q13247 344 aaKnown RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TAF9Q16594 264 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 RNASE10Q5GAN6 216 aaKnown RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 FAM74A1Q5RGS3 127 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 UBALD1Q8TB05 177 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CT55Q8WUE5 264 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MRGPRX4Q96LA9 322 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 OR2M2Q96R28 347 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 HDHD3Q9BSH5 251 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 NPAP1Q9NZP6 1156 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 FOXJ2Q9P0K8 574 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 LUZP4Q9P127 313 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 LRFN1Q9P244 771 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CACNA1BQ00975 2339 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CFAP47Q6ZTR5 3102 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TRBV5-7A0A0A0MS05 114 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ANKRD20A5PA0PJZ0 165 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 C10orf142B7Z368 130 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 LGALS8O00214 317 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 PHYHO14832 338 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CER1O95813 267 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 NAT1P18440 290 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 GALP22466 123 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 S100A1P23297 94 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 FAUP35544 74 aaKnown RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MAP2K6P52564 334 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 SUCLG1P53597 346 aaKnown RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 FOXG1P55316 489 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 BTG1P62324 171 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZXDAP98168 799 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 BCL2A1Q16548 175 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TIGD3Q6B0B8 471 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MRPL14Q6P1L8 145 aaKnown RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ANKRD16Q6P6B7 361 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 AAED1Q7RTV5 226 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MAML2Q8IZL2 1156 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 C9orf62Q8N4C0 152 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 GALNT11Q8NCW6 608 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 NOXO1Q8NFA2 376 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 OR5D14Q8NGL3 314 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 PIGCQ92535 297 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TTC9Q92623 222 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TOMM40LQ969M1 308 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 SEH1LQ96EE3 360 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 PCED1AQ9H1Q7 454 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 GPN1Q9HCN4 374 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CHMP1AQ9HD42 196 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZFP64Q9NPA5 681 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF275Q9NSD4 429 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 GLTPQ9NZD2 209 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 PIGLQ9Y2B2 252 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CCDC187A0A096LP49 1063 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 IGHV1-45A0A0A0MS14 117 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 LNP1A1A4G5 178 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CENPBD1B2RD01 187 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 H7C417 338 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZIC3O60481 467 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF432O94892 652 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ECDO95905 644 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 VSIG8P0DPA2 414 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF250P15622 560 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 BLVRBP30043 206 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 NTF4P34130 210 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 HTR5AP47898 357 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 DUSP3P51452 185 aaPredicted RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms