RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PPA2Q9H2U2 334 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 DPAGT1Q9H3H5 408 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM38BQ9NVV0 291 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 VPREB3Q9UKI3 123 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 PPP1R3CQ9UQK1 317 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 DNAJC15Q9Y5T4 150 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 U3KQK5 164 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 IGKV1D-42A0A075B6H8 117 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 A0A096LPI6 279 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 IGHV3-64DA0A0J9YX35 117 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 LOC102725191A0A1B0GVB3 256 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 IQCMA0A1B0GVH7 501 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 ANKRD61A6NGH8 418 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF726A6NNF4 738 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF879B4DU55 563 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 LRRN3E7EW58 273 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 H3BQF6 201 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 P2RY10O00398 339 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 TIMM8AO60220 97 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-204ENST00000549064 DBIP07108 87 aaKnown RBP5.31□□□□□ -1.56
LIMA1-204ENST00000549064 HOXB5P09067 269 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 MYL2P10916 166 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 ARRB2P32121 409 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 APLNRP35414 380 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 TGFBR2P37173 567 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 BIDP55957 195 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 MAPK11Q15759 364 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 XKR7Q5GH72 579 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 MTX3Q5HYI7 312 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 PABPC1L2AQ5JQF8 200 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 CFAP157Q5JU67 520 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 IL23RQ5VWK5 629 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 WDR25Q64LD2 544 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-204ENST00000549064 ZYG11AQ6WRX3 759 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 SLC16A14Q7RTX9 510 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 AMIGO2Q86SJ2 522 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 SERPINA11Q86U17 422 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 HAPLN4Q86UW8 402 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF440Q8IYI8 595 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 LRRC18Q8N456 261 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 NATD1Q8N6N6 113 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 C19orf18Q8NEA5 215 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 GJC3Q8NFK1 279 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 TWIST2Q8WVJ9 160 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 C10orf82Q8WW14 230 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 RITA1Q96K30 269 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 SAMD8Q96LT4 415 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 C3orf30Q96M34 536 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 FUT8Q9BYC5 575 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 SLC19A3Q9BZV2 496 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 LRMDAQ9H2I8 198 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 C1orf198Q9H425 327 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 CYSLTR2Q9NS75 346 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 CLN8Q9UBY8 286 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 MARCOQ9UEW3 520 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-204ENST00000549064 MIOXQ9UGB7 285 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 UTP11Q9Y3A2 253 aaKnown RBP5.31□□□□□ -1.56
LIMA1-204ENST00000549064 SAR1BQ9Y6B6 198 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 USH1CQ9Y6N9 552 aa5.31□□□□□ -1.56
LIMA1-204ENST00000549064 LOC100509620A0A075B734 347 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 A0A087WUJ7 227 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 C5orf49A4QMS7 147 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 C11orf98E9PRG8 122 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 EBAG9O00559 213 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 ENSAO43768 121 aaKnown RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 MITFO75030 526 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 LYPLA1O75608 230 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 JTBO76095 146 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 FARS2O95363 451 aaKnown RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 PTHP01270 115 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 MMP7P09237 267 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 CD28P10747 220 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF182P17025 639 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 HOXA5P20719 270 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 PRPS1L1P21108 318 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 AHCYP23526 432 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 STOMP27105 288 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 GCAP28676 217 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 HOXD3P31249 432 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 RPL4P36578 427 aaKnown RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 PPP1CBP62140 327 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 HSF2Q03933 536 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 PRB3Q04118 309 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 COX10Q12887 443 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 PSG7Q13046 419 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 GNA13Q14344 377 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 UGT3A2Q3SY77 523 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 SLC36A2Q495M3 483 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 CDONQ4KMG0 1287 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 LRIF1Q5T3J3 769 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF841Q6ZN19 808 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 TIFABQ6ZNK6 161 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 LRRC74BQ6ZQY2 392 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 RNF165Q6ZSG1 346 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 PEX5LQ8IYB4 626 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 OR52P1PQ8NH57 321 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 AKR7LQ8NHP1 331 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 AGR3Q8TD06 166 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 SLC38A4Q969I6 547 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM54Q969K7 222 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms