RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FAM122BQ7Z309 247 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 OR4C13Q8NGP0 309 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 STON2Q8WXE9 905 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 PITX2Q99697 317 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 FAM234AQ9H0X4 552 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 RASSF4Q9H2L5 321 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 PPA2Q9H2U2 334 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 VSX1Q9NZR4 365 aaPredicted RBP13.93□□□□□ -0.18
VPS29-204ENST00000548259 KAAG1Q9UBP8 84 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 KDELR2P33947 212 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 GRK5P34947 590 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 GGT2P36268 569 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 GPR4P46093 362 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 TPTEP56180 551 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 SELENOWP63302 87 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 HIST1H3AP68431 136 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 FHL1Q13642 323 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 SLC36A3Q495N2 470 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 RABL3Q5HYI8 236 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 VAX1Q5SQQ9 334 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 HIST2H3PS2Q5TEC6 136 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 OTPQ5XKR4 325 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 HIST2H3AQ71DI3 136 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 CALHM3Q86XJ0 350 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 OR2AJ1Q8NGZ0 328 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 OR2T6Q8NHC8 308 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 DYDC1Q8WWB3 177 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 TLCD1Q96CP7 247 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 ATF6BQ99941 703 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 NUAK2Q9H093 628 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 RAB18Q9NP72 206 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 C14orf119Q9NWQ9 140 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 C1orf123Q9NWV4 160 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 RHCGQ9UBD6 479 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 LHFPL6Q9Y693 200 aa13.92□□□□□ -0.18
VPS29-204ENST00000548259 GGT3PA6NGU5 568 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 CD300LBA8K4G0 201 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 NPFFO15130 113 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 PTBP3O95758 552 aaKnown RBP13.91□□□□□ -0.18
VPS29-204ENST00000548259 NPPAP01160 153 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 ACSM4P0C7M7 580 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 RPS6KA3P51812 740 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 MICBQ29980 383 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 SLC36A1Q7Z2H8 476 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 MRGBPQ9NV56 204 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 RAB21Q9UL25 225 aa13.91□□□□□ -0.18
VPS29-204ENST00000548259 TET2Q6N021 2002 aaPredicted RBP13.91□□□□□ -0.18
VPS29-204ENST00000548259 MEIOCA2RUB1 952 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 SOCS2O14508 198 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 CDC42EP2O14613 210 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 GRPP07492 148 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 MUC1P15941 1255 aaPredicted RBP13.9□□□□□ -0.18
VPS29-204ENST00000548259 MDH1P40925 334 aaKnown RBP13.9□□□□□ -0.18
VPS29-204ENST00000548259 YAP1P46937 504 aaKnown RBP13.9□□□□□ -0.18
VPS29-204ENST00000548259 PRSS12P56730 875 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 EMX1Q04741 257 aaPredicted RBP13.9□□□□□ -0.18
VPS29-204ENST00000548259 TRAP1Q12931 704 aaKnown RBP13.9□□□□□ -0.18
VPS29-204ENST00000548259 CORO6Q6QEF8 472 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 CYP4Z1Q86W10 505 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 FAM90A1Q86YD7 464 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 SPTSSAQ969W0 71 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 CLPTM1LQ96KA5 538 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 KRCC1Q9NPI7 259 aaPredicted RBP13.9□□□□□ -0.18
VPS29-204ENST00000548259 NRIP3Q9NQ35 241 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 SIRT7Q9NRC8 400 aa13.9□□□□□ -0.18
VPS29-204ENST00000548259 MRPL15Q9P015 296 aaKnown RBP13.9□□□□□ -0.18
VPS29-204ENST00000548259 A0A087WUU8 490 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 NDUFB3O43676 98 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 KIR2DS4P43632 304 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 ACSM1Q08AH1 577 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 TEX36Q5VZQ5 186 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 NCR3LG1Q68D85 454 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 DPY19L2P2Q6ZN68 376 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 C11orf44Q8N8P7 122 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 GPX7Q96SL4 187 aaPredicted RBP13.89□□□□□ -0.19
VPS29-204ENST00000548259 SEMA6AQ9H2E6 1030 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 ANKRD19PQ9H560 264 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 RANBP3Q9H6Z4 567 aaPredicted RBP13.89□□□□□ -0.19
VPS29-204ENST00000548259 TMBIM4Q9HC24 238 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 IER3IP1Q9Y5U9 82 aa13.89□□□□□ -0.19
VPS29-204ENST00000548259 BHLHE40O14503 412 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 SAA4P35542 130 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 EFNB2P52799 333 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 BLMHQ13867 455 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 MEP1BQ16820 701 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 KRTAP27-1Q3LI81 207 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 LRRC10Q5BKY1 277 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 PGBD2Q6P3X8 592 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 C1orf122Q6ZSJ8 110 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 TSEN54Q7Z6J9 526 aaKnown RBP13.88□□□□□ -0.19
VPS29-204ENST00000548259 GCSAMQ8N6F7 178 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 KLHDC1Q8N7A1 406 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 LY6G5BQ8NDX9 201 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 OR2T12Q8NG77 320 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 CFHR4Q92496 578 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 OPA3Q9H6K4 179 aa13.88□□□□□ -0.19
VPS29-204ENST00000548259 FAM220BPB1ANY3 271 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 M0R135 149 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 PPP1R3DO95685 299 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 RENP00797 406 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms