RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 CELF2-AS1Q8N7Q2 184 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 ZNF511Q8NB15 262 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 OR9Q1Q8NGQ5 310 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 OR2T4Q8NH00 348 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 OR2AE1Q8NHA4 323 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 Q8TCH9 128 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 SPRYD4Q8WW59 207 aaPredicted RBP11.14□□□□□ -0.63
CPSF6-204ENST00000547486 RAB40AQ8WXH6 277 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 SPTSSAQ969W0 71 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 NEIL1Q96FI4 390 aaPredicted RBP11.14□□□□□ -0.63
CPSF6-204ENST00000547486 ZNF799Q96GE5 643 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 TSSK6Q9BXA6 273 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 NMNAT2Q9BZQ4 307 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 UFSP2Q9NUQ7 469 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 KCNG2Q9UJ96 466 aa11.14□□□□□ -0.63
CPSF6-204ENST00000547486 IGHV2-70DA0A0C4DH43 119 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 KIR2DS1A0A191URI9 304 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 DNAJC9-AS1A6NH13 148 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 DCTN3O75935 186 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 GYPBP06028 91 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 CLUP10909 449 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 CPT2P23786 658 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 PRTN3P24158 256 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 GNB2P62879 340 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 CRMP1Q14194 572 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 OR8G1Q15617 311 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 PCK2Q16822 640 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 GLYATL3Q5SZD4 288 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 RPL13AP3Q6NVV1 102 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 LRRN1Q6UXK5 716 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 RBMS3Q6XE24 437 aaKnown RBP11.13□□□□□ -0.63
CPSF6-204ENST00000547486 MRPL21Q7Z2W9 205 aaKnown RBP11.13□□□□□ -0.63
CPSF6-204ENST00000547486 DCXRQ7Z4W1 244 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 LINC00471Q8N535 108 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 AQP11Q8NBQ7 271 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 OR52L1Q8NGH7 329 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 TAF15Q92804 592 aaKnown RBP eCLIP11.13□□□□□ -0.63
CPSF6-204ENST00000547486 NDE1Q9NXR1 346 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 COMMD3-BMI1R4GMX3 469 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 U3KQV3 271 aa11.13□□□□□ -0.63
CPSF6-204ENST00000547486 ZNF593O00488 134 aaPredicted RBP11.12□□□□□ -0.63
CPSF6-204ENST00000547486 TNFRSF13BO14836 293 aaPredicted RBP11.12□□□□□ -0.63
CPSF6-204ENST00000547486 SOX14O95416 240 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 PLATP00750 562 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 SPARCP09486 303 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 HKR1P10072 659 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 SLC2A1P11166 492 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 SPI1P17947 270 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 PSMB10P40306 273 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 PITPNBP48739 271 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 PRKXP51817 358 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 BAMBIQ13145 260 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 MICAQ29983 383 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 WDR25Q64LD2 544 aaPredicted RBP11.12□□□□□ -0.63
CPSF6-204ENST00000547486 SFRP4Q6FHJ7 346 aaPredicted RBP11.12□□□□□ -0.63
CPSF6-204ENST00000547486 DRAM2Q6UX65 266 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 BTNL3Q6UXE8 466 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 C1orf87Q8N0U7 546 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 OR8B3Q8NGG8 313 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 ERGIC1Q969X5 290 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 UPRTQ96BW1 309 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 NSL1Q96IY1 281 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 PLEKHA8Q96JA3 519 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 OR8B2Q96RD0 313 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 MS4A7Q9GZW8 240 aaPredicted RBP11.12□□□□□ -0.63
CPSF6-204ENST00000547486 CENPMQ9NSP4 180 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 TBC1D23Q9NUY8 699 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 ARMC1Q9NVT9 282 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 N6AMT1Q9Y5N5 214 aa11.12□□□□□ -0.63
CPSF6-204ENST00000547486 GGT3PA6NGU5 568 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 C22orf46C9J442 243 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 GMDSO60547 372 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 PTBP3O95758 552 aaKnown RBP11.11□□□□□ -0.63
CPSF6-204ENST00000547486 PPIAL4GP0DN37 164 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 T-ENOLP0DO92 83 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 IRF2P14316 349 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 ENTPD1P49961 510 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 MNAT1P51948 309 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 SLC25A1P53007 311 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 TRIM25Q14258 630 aaKnown RBP11.11□□□□□ -0.63
CPSF6-204ENST00000547486 SLC9A3R2Q15599 337 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 TEX30Q5JUR7 227 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 LINC01590Q5TEZ4 76 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 LCN8Q6JVE9 175 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 DCDC5Q6ZRR9 648 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 C9orf139Q6ZV77 190 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 SPATC1Q76KD6 591 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 DHFR2Q86XF0 187 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 PARP8Q8N3A8 854 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 BOLLQ8N9W6 283 aaKnown RBP11.11□□□□□ -0.63
CPSF6-204ENST00000547486 OR11L1Q8NGX0 322 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 SLAMF6Q96DU3 332 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 CCT8L2Q96SF2 557 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 KCNJ15Q99712 375 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 NIPSNAP1Q9BPW8 284 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 NUDT16L1Q9BRJ7 211 aaKnown RBP11.11□□□□□ -0.63
CPSF6-204ENST00000547486 COPS4Q9BT78 406 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 DGCR6LQ9BY27 220 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 MAGIXQ9H6Y5 334 aa11.11□□□□□ -0.63
CPSF6-204ENST00000547486 RNF7Q9UBF6 113 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms