RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 B3GLCTQ6Y288 498 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 GPAT4Q86UL3 456 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 LHFPL3Q86UP9 236 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 FJX1Q86VR8 437 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 ERI1Q8IV48 349 aaKnown RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 Q8NA96 180 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 OR6K6Q8NGW6 343 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 CPT1CQ8TCG5 803 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 SPRYD4Q8WW59 207 aaPredicted RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 UFD1Q92890 307 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 MCHR2Q969V1 340 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 SARAFQ96BY9 339 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 SMIM19Q96E16 107 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 DNAJA3Q96EY1 480 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 PELI1Q96FA3 418 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 GPR137Q96N19 417 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 OR8B4Q96RC9 309 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 GPR61Q9BZJ8 451 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 NELFAQ9H3P2 528 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 ING3Q9NXR8 418 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 KCNN3Q9UGI6 736 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 ST6GALNAC2Q9UJ37 374 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 A3GALT2U3KPV4 340 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 PTPRQQ9UMZ3 2332 aa7.4□□□□□ -1.23
VPS29-203ENST00000546588 MGAQ8IWI9 3026 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 LOC100506127A0A0U1RQW1 187 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 TRDV1A0A1B0GX56 115 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 A0A1W2PPW3 197 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 MBD3L4A6NDZ8 208 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 MBD3L3A6NE82 208 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 MBD3L5A6NJ08 208 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 CD8B2A6NJW9 211 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 AHRRA9YTQ3 701 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 DHHO43323 396 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 GPRIN2O60269 458 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 SLC43A1O75387 559 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 RBBP9O75884 186 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 KNG1P01042 644 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 NPR2P20594 1047 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 TCEA1P23193 301 aaKnown RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 NAA10P41227 235 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 CSNK1A1P48729 337 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 SELENOPP49908 381 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 GBX2P52951 348 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 CLRN1P58418 232 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 GMFBP60983 142 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 CDK5R1Q15078 307 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 SF3B4Q15427 424 aaKnown RBP eCLIP7.39□□□□□ -1.232e-7■■■■□ 25.8
VPS29-203ENST00000546588 EIF2S3LQ2VIR3 472 aaKnown RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 C19orf54Q5BKX5 351 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 PHYHD1Q5SRE7 291 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 SAPCD1Q5SSQ6 148 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 SLC18B1Q6NT16 456 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 RPL22L1Q6P5R6 122 aaKnown RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 KCTD18Q6PI47 426 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 PLEKHG7Q6ZR37 379 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 DPY19L4Q7Z388 723 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 ZNF679Q8IYX0 411 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 GPR137CQ8N3F9 429 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 OR10H4Q8NGA5 316 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 OR51L1Q8NGJ5 315 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 OR52N5Q8NH56 324 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 MBD3L2Q8NHZ7 208 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 ABHD3Q8WU67 409 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 RNF133Q8WVZ7 376 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 PHYHIPQ92561 330 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 GMPPAQ96IJ6 420 aaPredicted RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 C4orf36Q96KX1 117 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 MED18Q9BUE0 208 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 EMC6Q9BV81 110 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 C1orf43Q9BWL3 253 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 NAA50Q9GZZ1 169 aaKnown RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 PRORYQ9H606 182 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 ISG20L2Q9H9L3 353 aaKnown RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 CALHM2Q9HA72 323 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 PNRC2Q9NPJ4 139 aaKnown RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 POLE4Q9NR33 117 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 PARPBPQ9NWS1 579 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 MRM2Q9UI43 246 aaKnown RBP7.39□□□□□ -1.23
VPS29-203ENST00000546588 STUB1Q9UNE7 303 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 TP53TG5Q9Y2B4 290 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 KLHDC2Q9Y2U9 406 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 LHFPL6Q9Y693 200 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 ACACAQ13085 2346 aa7.39□□□□□ -1.23
VPS29-203ENST00000546588 IGHV3-15A0A0B4J1V0 119 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 ANKRD61A6NGH8 418 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 METTL15A6NJ78 407 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 ZNF726A6NNF4 738 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 SCAF4O95104 1147 aaKnown RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 SYNGR4O95473 234 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 HLA-DPB1P04440 258 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 CRHP06850 196 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 YES1P07947 543 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 MRPL3P09001 348 aaKnown RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 HOXD4P09016 255 aaPredicted RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 TACSTD2P09758 323 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 GADD45AP24522 165 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 PCSK6P29122 969 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 AGTR1P30556 359 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 OPRL1P41146 370 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms