RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 UTS2O95399 124 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 NQO2P16083 231 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 RORAP35398 523 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 DLSTP36957 453 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 OR2B8PP59922 312 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 GGTLC2Q14390 218 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 WDR38Q5JTN6 314 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 SLC35D3Q5M8T2 416 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 LINC00114Q6XXX2 140 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 CD163Q86VB7 1156 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 UBQLN4Q9NRR5 601 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 MPZL1O95297 269 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 ITGA5P08648 1049 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 NR0B1P51843 470 aaKnown RBP12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 DCDP81605 110 aaKnown RBP12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 EGR4Q05215 589 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 CHAF1BQ13112 559 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 C2orf76Q3KRA6 126 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 KRBOX4Q5JUW0 171 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 DCAF12Q5T6F0 453 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 SLC36A1Q7Z2H8 476 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 FAM46BQ96A09 425 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 RHOVQ96L33 236 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 NAA11Q9BSU3 229 aaPredicted RBP12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 OR11A1Q9GZK7 315 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 CENPMQ9NSP4 180 aa12.77□□□□□ -0.36
SFSWAP-210ENST00000541286 PROB1E7EW31 1015 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 EIF1BO60739 113 aaKnown RBP12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 GLSO94925 669 aaPredicted RBP12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 PRSS3P35030 304 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 EIF1P41567 113 aaKnown RBP12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 ID4P47928 161 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 ADAM8P78325 824 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 DMRTC1Q5HYR2 192 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 GTPBP8Q8N3Z3 284 aaPredicted RBP12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 OR1J2Q8NGS2 313 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 SLC39A7Q92504 469 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 LCORQ96JN0 433 aaPredicted RBP12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 NMNAT2Q9BZQ4 307 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 STEAP1Q9UHE8 339 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 METTL21EPA6NDL7 271 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 OR4C45A6NMZ5 311 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 CALCRP30988 508 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 OTX2P32243 289 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 PSMD4P55036 377 aaKnown RBP12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 NCMAPQ5T1S8 102 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 HLA-DQA1Q5Y7H0 255 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 JMJD6Q6NYC1 403 aaPredicted RBP12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 PRSS35Q8N3Z0 413 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 FAM3DQ96BQ1 224 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 TMPRSS13Q9BYE2 586 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 SELENOIQ9C0D9 397 aa12.77□□□□□ -0.37
SFSWAP-210ENST00000541286 PCSK5Q92824 1860 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 EML6Q6ZMW3 1958 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 GGT3PA6NGU5 568 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 ZNF354AO60765 605 aaPredicted RBP12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 OPN1LWP04000 364 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 AMY2AP04746 511 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 WT1P19544 449 aaPredicted RBP12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 IL12BP29460 328 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 GLYATL3Q5SZD4 288 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 MOB3CQ70IA8 216 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 KMT5CQ86Y97 462 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 LINC00346Q8IVM7 164 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 CHST4Q8NCG5 386 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 SEMA6DQ8NFY4 1073 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 OR6S1Q8NH40 331 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 PTPMT1Q8WUK0 201 aaPredicted RBP12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 PPP1R1CQ8WVI7 109 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 CLCC1Q96S66 551 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 PRR13Q9NZ81 148 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 COL5A1P20908 1838 aaPredicted RBP12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 LRP3O75074 770 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 FGF5P12034 268 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 ELAVL1Q15717 326 aaKnown RBP12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 RAB11BQ15907 218 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 EIF4E3Q8N5X7 224 aaKnown RBP12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 ZNF417Q8TAU3 575 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 GPR119Q8TDV5 335 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 TBL1XR1Q9BZK7 514 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 B9D1Q9UPM9 204 aa12.76□□□□□ -0.37
SFSWAP-210ENST00000541286 LOC101059948A0A1B0GTJ6 334 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 TOX3O15405 576 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 CTAG2O75638 210 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 KLF7O75840 302 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 PNPP00491 289 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 UMODP07911 640 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 CALCBP10092 127 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 PNMTP11086 282 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 MGMTP16455 207 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 PNLIPRP2P54317 469 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 S100A12P80511 92 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 HABP2Q14520 560 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 PEA15Q15121 130 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 EIF2S3LQ2VIR3 472 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 CYB5R2Q6BCY4 276 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 CDPF1Q6NVV7 123 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 ATG4DQ86TL0 474 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 ACBD4Q8NC06 268 aa12.75□□□□□ -0.37
SFSWAP-210ENST00000541286 OR4S1Q8NGB4 309 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms