RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 NMES1Q9C002 83 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 MED29Q9NX70 200 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 DENND4AQ7Z401 1863 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 MEX3AA1L020 520 aaKnown RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 C2orf72A6NCS6 295 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 A8MVM7 634 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 NUDT19A8MXV4 375 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 F8VVB4 439 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 F8VWA3 439 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 MBTPS2O43462 519 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 EIF3GO75821 320 aaKnown RBP eCLIP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 SLC2A1P11166 492 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 PPT1P50897 306 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 RPL7L1Q6DKI1 246 aaKnown RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 GLIPR1L1Q6UWM5 242 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 CLEC18BQ6UXF7 455 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 OR5D14Q8NGL3 314 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 OR5H2Q8NGV7 314 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 RAB3CQ96E17 227 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 SEC61A2Q9H9S3 476 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 FN3KRPQ9HA64 309 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 TAF9BQ9HBM6 251 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 CYTL1Q9NRR1 136 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 PQLC2LA1A4F0 135 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 IFNA4P05014 189 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 HCKP08631 526 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 IL11P20809 199 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 POLR2HP52434 150 aaKnown RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 SLC26A5P58743 744 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 EIF5AP63241 154 aaKnown RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 NAAAQ02083 359 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 POU3F1Q03052 451 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 ETV3LQ6ZN32 361 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 GPBAR1Q8TDU6 330 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 MAFIPQ8WZ33 124 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 EMC6Q9BV81 110 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 VSX1Q9NZR4 365 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 USP34Q70CQ2 3546 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 PLPP3O14495 311 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 RCC1P18754 421 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 CPT2P23786 658 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 YPEL5P62699 121 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 KRBOX4Q5JUW0 171 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 DTWD2Q8NBA8 298 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 PTX4Q96A99 478 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 FBXO17Q96EF6 278 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 SMCO4Q9NRQ5 59 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 RCC2Q9P258 522 aaKnown RBP10.03□□□□□ -0.8
SYNE1-237ENST00000539504 WIF1Q9Y5W5 379 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 FLVCR1Q9Y5Y0 555 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 LTBP2Q14767 1821 aa10.03□□□□□ -0.8
SYNE1-237ENST00000539504 FANCMQ8IYD8 2048 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 M0R036 132 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 TO15178 435 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 CRTAPO75718 401 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-237ENST00000539504 BPNT1O95861 308 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 CLPSP04118 112 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 SNRNP70P08621 437 aaKnown RBP10.02□□□□□ -0.8
SYNE1-237ENST00000539504 POU2F2P09086 479 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 GIMD1P0DJR0 217 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 HSD11B1P28845 292 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 ID4P47928 161 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 PRSS54Q6PEW0 395 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 OR51E1Q8TCB6 317 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 AKR1E2Q96JD6 320 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 FAM71F1Q96KD3 344 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-237ENST00000539504 GABRG3Q99928 467 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 NUDT22Q9BRQ3 303 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 CRISPLD2Q9H0B8 497 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 TMEM100Q9NV29 134 aa10.02□□□□□ -0.8
SYNE1-237ENST00000539504 DHCR7Q9UBM7 475 aaKnown RBP10.02□□□□□ -0.8
SYNE1-237ENST00000539504 MRPS28Q9Y2Q9 187 aaKnown RBP10.02□□□□□ -0.8
SYNE1-237ENST00000539504 TDRD6O60522 2096 aaKnown RBP10.02□□□□□ -0.81
SYNE1-237ENST00000539504 BLACEA4D250 179 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SOCS1O15524 211 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 VEGFBP49765 207 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 CAV2P51636 162 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 S100A12P80511 92 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 HTRA3P83110 453 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 FAM109BQ6ICB4 259 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-237ENST00000539504 HOGA1Q86XE5 327 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SLC22A18ASQ8N1D0 253 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SLC26A10Q8NG04 563 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 PDE7BQ9NP56 450 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 NIT2Q9NQR4 276 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SDK1Q7Z5N4 2213 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 FRG2CA6NGY1 282 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 H0YIG0 161 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SSX5O60225 188 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF354AO60765 605 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SFT2D2O95562 160 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SCGB1D2O95969 90 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 FAM157CP0CG43 387 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 PET100P0DJ07 73 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 THEGLP0DJG4 465 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF14P17017 642 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-237ENST00000539504 ADH6P28332 368 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 LPAR6P43657 344 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 CSNK2A1P68400 391 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms