RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 MMP16P51512 607 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 ATP6AP1Q15904 470 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 GLYATL3Q5SZD4 288 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 CPOQ8IVL8 374 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 OR5K1Q8NHB7 308 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 ZNF420Q8TAQ5 688 aaPredicted RBP12.46□□□□□ -0.41
USP28-204ENST00000537642 DNAJC9Q8WXX5 260 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 AMELYQ99218 206 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 REPIN1Q9BWE0 567 aaKnown RBP12.46□□□□□ -0.41
USP28-204ENST00000537642 G6PC2Q9NQR9 355 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 PAPOLBQ9NRJ5 636 aaKnown RBP12.46□□□□□ -0.41
USP28-204ENST00000537642 UBAP1Q9NZ09 502 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 KIF17Q9P2E2 1029 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 IGHV3-64DA0A0J9YX35 117 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 CD300LBA8K4G0 201 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 PHF1O43189 567 aaPredicted RBP12.45□□□□□ -0.42
USP28-204ENST00000537642 SELENOFO60613 162 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 SLC2A5P22732 501 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 CRISP1P54107 249 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 BTG1P62324 171 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 GRB2P62993 217 aaKnown RBP12.45□□□□□ -0.42
USP28-204ENST00000537642 ZMYND11Q15326 602 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 KLHL12Q53G59 568 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 C1orf146Q5VVC0 180 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 CXXC5Q7LFL8 322 aaKnown RBP12.45□□□□□ -0.42
USP28-204ENST00000537642 SHFQ7M4L6 423 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 LRRC28Q86X40 367 aaPredicted RBP12.45□□□□□ -0.42
USP28-204ENST00000537642 PARP8Q8N3A8 854 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 BBS1Q8NFJ9 593 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 RNF133Q8WVZ7 376 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 SPRYD4Q8WW59 207 aaPredicted RBP12.45□□□□□ -0.42
USP28-204ENST00000537642 DUS3LQ96G46 650 aaKnown RBP12.45□□□□□ -0.42
USP28-204ENST00000537642 N6AMT1Q9Y5N5 214 aa12.45□□□□□ -0.42
USP28-204ENST00000537642 IFNL4K9M1U5 179 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 PRODHO43272 600 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 CYB5R3P00387 301 aaPredicted RBP12.44□□□□□ -0.42
USP28-204ENST00000537642 SRP14P37108 136 aaKnown RBP12.44□□□□□ -0.42
USP28-204ENST00000537642 PMELP40967 661 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 OPRL1P41146 370 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 SLC15A1P46059 708 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 CX3CR1P49238 355 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 MAB21L1Q13394 359 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 TMEM155Q4W5P6 130 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 FAHD2BQ6P2I3 314 aaPredicted RBP12.44□□□□□ -0.42
USP28-204ENST00000537642 PRSS45Q7RTY3 260 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 MOGAT3Q86VF5 341 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 OTOSQ8NHW6 89 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 FAHD2AQ96GK7 314 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 PLEKHA8Q96JA3 519 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 TOR3AQ9H497 397 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 TVP23BQ9NYZ1 205 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 AP4S1Q9Y587 144 aa12.44□□□□□ -0.42
USP28-204ENST00000537642 GGT3PA6NGU5 568 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 XRCC2O43543 280 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 MITFO75030 526 aaPredicted RBP12.43□□□□□ -0.42
USP28-204ENST00000537642 PNPP00491 289 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 AVPP01185 164 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 ANXA2P07355 339 aaKnown RBP12.43□□□□□ -0.42
USP28-204ENST00000537642 CA6P23280 308 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 FASP25445 335 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 ZFP36P26651 326 aaKnown RBP12.43□□□□□ -0.42
USP28-204ENST00000537642 HSD11B1P28845 292 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 CD200P41217 278 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 NAA10P41227 235 aaPredicted RBP12.43□□□□□ -0.42
USP28-204ENST00000537642 GATA4P43694 442 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 RAD23AP54725 363 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 LCN2P80188 198 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 PTGES3Q15185 160 aaKnown RBP12.43□□□□□ -0.42
USP28-204ENST00000537642 OR8G1Q15617 311 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 SNAPC1Q16533 368 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 ZNF181Q2M3W8 571 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 SLC35D3Q5M8T2 416 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 C1orf229Q6ZS94 237 aaPredicted RBP12.43□□□□□ -0.42
USP28-204ENST00000537642 RHOUQ7L0Q8 258 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 AMIGO2Q86SJ2 522 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 KLHL36Q8N4N3 616 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 SPICQ8N5J4 248 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 CELF2-AS1Q8N7Q2 184 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 LRTOMTQ8WZ04 291 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 SPSB4Q96A44 273 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 TEX12Q9BXU0 123 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 PATZ1Q9HBE1 687 aaKnown RBP12.43□□□□□ -0.42
USP28-204ENST00000537642 DNAJC27Q9NZQ0 273 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 PCDHB10Q9UN67 800 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 KLHDC2Q9Y2U9 406 aa12.43□□□□□ -0.42
USP28-204ENST00000537642 DOCK11Q5JSL3 2073 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 A0A0G2JMP0 313 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 A0A0X1KG70 313 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 CCDC182A6NF36 153 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 RNF212BA8MTL3 300 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 F5H0A9 414 aaPredicted RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 G3V2T6 193 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 TBX1O43435 398 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 ZNF205O95201 554 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 LYNP07948 512 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 H2BFMP0C1H6 154 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 MDH2P40926 338 aaKnown RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 ZNF121P58317 390 aaPredicted RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 SEC61A1P61619 476 aaKnown RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 RPS7P62081 194 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms