RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PGBD2Q6P3X8 592 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 C16orf89Q6UX73 402 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 LINC00471Q8N535 108 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 CYB561A3Q8NBI2 242 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 Q8TCH9 128 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 ZNF48Q96MX3 618 aaPredicted RBP12.31□□□□□ -0.44
VPS28-215ENST00000531924 COPS4Q9BT78 406 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 ADAT1Q9BUB4 502 aaKnown RBP12.31□□□□□ -0.44
VPS28-215ENST00000531924 EGLN3Q9H6Z9 239 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 ERVK-18Q9QC07 812 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 RNF7Q9UBF6 113 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 CDH10Q9Y6N8 788 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.3□□□□□ -0.44
VPS28-215ENST00000531924 A0A1B0GWJ7 208 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 TVP23AA6NH52 213 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 CLDN34H7C241 214 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 ENSAO43768 121 aaKnown RBP12.3□□□□□ -0.44
VPS28-215ENST00000531924 SNX3O60493 162 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 GMDSO60547 372 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 SPARCP09486 303 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 NPY4RP50391 375 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 FGF12P61328 243 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 PAX2Q02962 417 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 GPR157Q5UAW9 335 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 WDR25Q64LD2 544 aaPredicted RBP12.3□□□□□ -0.44
VPS28-215ENST00000531924 DRAM2Q6UX65 266 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 LYPD2Q6UXB3 125 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 C9orf139Q6ZV77 190 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 LNX2Q8N448 690 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 C19orf18Q8NEA5 215 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 OR10S1Q8NGN2 331 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 MAP6Q96JE9 813 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 UNKLQ9H9P5 680 aaKnown RBP12.3□□□□□ -0.44
VPS28-215ENST00000531924 PNRC2Q9NPJ4 139 aaKnown RBP12.3□□□□□ -0.44
VPS28-215ENST00000531924 TRIM36Q9NQ86 728 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 CENPMQ9NSP4 180 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 TBC1D23Q9NUY8 699 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 MRPL22Q9NWU5 206 aaKnown RBP12.3□□□□□ -0.44
VPS28-215ENST00000531924 TAGLN3Q9UI15 199 aa12.3□□□□□ -0.44
VPS28-215ENST00000531924 A6NLC8 198 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 POM121CA8CG34 1229 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 TMPRSS2O15393 492 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 CRYBA1P05813 215 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 GRPP07492 148 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 FMO3P31513 532 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 RPS27P42677 84 aaKnown RBP12.29□□□□□ -0.44
VPS28-215ENST00000531924 MPPED2Q15777 294 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 SPATS1Q496A3 300 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 SFRP4Q6FHJ7 346 aaPredicted RBP12.29□□□□□ -0.44
VPS28-215ENST00000531924 SPATC1Q76KD6 591 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 DCXRQ7Z4W1 244 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 DEFB107AQ8IZN7 70 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 FITM2Q8N6M3 262 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 SPERTQ8NA61 448 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 OR51L1Q8NGJ5 315 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 PCGF1Q9BSM1 259 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 MRPL15Q9P015 296 aaKnown RBP12.29□□□□□ -0.44
VPS28-215ENST00000531924 CD300AQ9UGN4 299 aa12.29□□□□□ -0.44
VPS28-215ENST00000531924 TRAV38-1A0A0B4J264 116 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 hCG_1807616A0A1W2PRN6 198 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 ANKRD30BLA7E2S9 258 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 C3orf80F5H4A9 247 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 LGALS8O00214 317 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 ADAM20O43506 726 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 CCNB2O95067 398 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 PLATP00750 562 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 IFNGP01579 166 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 LIPFP07098 398 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 PRKXP51817 358 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 MNAT1P51948 309 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 BPIFB3P59826 476 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 ZNF92Q03936 586 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 TUSC1Q2TAM9 212 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 SNAI3Q3KNW1 292 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 C16orf87Q6PH81 154 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 CYP2R1Q6VVX0 501 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 BRD3OSQ6XYD6 125 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 PLPP7Q8NBV4 271 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 OR9Q2Q8NGE9 314 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 OR9Q1Q8NGQ5 310 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 OR6K6Q8NGW6 343 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 OR2AE1Q8NHA4 323 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 C1orf147Q96MC9 270 aaPredicted RBP12.28□□□□□ -0.44
VPS28-215ENST00000531924 TSSK6Q9BXA6 273 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 OPA3Q9H6K4 179 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 TNFRSF19Q9NS68 423 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 C14orf119Q9NWQ9 140 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 C1orf123Q9NWV4 160 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 ARL2BPQ9Y2Y0 163 aa12.28□□□□□ -0.44
VPS28-215ENST00000531924 SOX21Q9Y651 276 aaPredicted RBP12.28□□□□□ -0.44
VPS28-215ENST00000531924 ZNF593O00488 134 aaPredicted RBP12.27□□□□□ -0.45
VPS28-215ENST00000531924 BHLHE40O14503 412 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 HOXA3O43365 443 aaPredicted RBP12.27□□□□□ -0.45
VPS28-215ENST00000531924 ATP8B1O43520 1251 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 NDUFA2O43678 99 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 DCTN3O75935 186 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 GRK5P34947 590 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 SLC15A1P46059 708 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 ENTPD1P49961 510 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 BLVRAP53004 296 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms