RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 LOC100130705A0A1B0GUX0 176 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 IQCF6A8MYZ5 107 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 H0YL77 283 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 NDUFS8O00217 210 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 LIPAP38571 399 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 NR4A2P43354 598 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 CXCR4P61073 352 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 CDK5R2Q13319 367 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 GFOD2Q3B7J2 385 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 ZMAT1Q5H9K5 638 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 FAM209AQ5JX71 171 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 Q71RC1 249 aaPredicted RBP11.35□□□□□ -0.59
VPS28-210ENST00000529182 RHOUQ7L0Q8 258 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 SSX6Q7RTT6 188 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 ENTHD1Q8IYW4 607 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 OR8G5Q8NG78 346 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 OR10AD1Q8NGE0 317 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 TRUB1Q8WWH5 349 aaKnown RBP11.35□□□□□ -0.59
VPS28-210ENST00000529182 ELMOD3Q96FG2 381 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 ZNF275Q9NSD4 429 aaPredicted RBP11.35□□□□□ -0.59
VPS28-210ENST00000529182 CLN6Q9NWW5 311 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 SMPD3Q9NY59 655 aaPredicted RBP11.35□□□□□ -0.59
VPS28-210ENST00000529182 TREM2Q9NZC2 230 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 NKX1-2Q9UD57 310 aaPredicted RBP11.35□□□□□ -0.59
VPS28-210ENST00000529182 IKZF2Q9UKS7 526 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 ZDHHC8Q9ULC8 765 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 ZFHX3Q15911 3703 aa11.35□□□□□ -0.59
VPS28-210ENST00000529182 IGHV4-61A0A0C4DH41 118 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 IGHV1-69-2A0A0G2JMI3 117 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 RP2O75695 350 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 LY6G6DO95868 133 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 APOC1P02654 83 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 ADH4P08319 380 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 SELEP16581 610 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 GABRB1P18505 474 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 ACHEP22303 614 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 GIFP27352 417 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 SNRPGP62308 76 aaKnown RBP11.34□□□□□ -0.59
VPS28-210ENST00000529182 TNFAIP6P98066 277 aaPredicted RBP11.34□□□□□ -0.59
VPS28-210ENST00000529182 RIN1Q13671 783 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 KCTD18Q6PI47 426 aaPredicted RBP11.34□□□□□ -0.59
VPS28-210ENST00000529182 ZNF322Q6U7Q0 402 aaPredicted RBP11.34□□□□□ -0.59
VPS28-210ENST00000529182 CLEC9AQ6UXN8 241 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 PLEKHG7Q6ZR37 379 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 BIVMQ86UB2 503 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 SPRYD4Q8WW59 207 aaPredicted RBP11.34□□□□□ -0.59
VPS28-210ENST00000529182 ITLN1Q8WWA0 313 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 ASB17Q8WXJ9 295 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 SGK3Q96BR1 496 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 REEP6Q96HR9 211 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 PGAM5Q96HS1 289 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 OR8B4Q96RC9 309 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 APOL4Q9BPW4 351 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 SLC30A2Q9BRI3 323 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 REPIN1Q9BWE0 567 aaKnown RBP11.34□□□□□ -0.59
VPS28-210ENST00000529182 CHODLQ9H9P2 273 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 TMEM14AQ9Y6G1 99 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 CR1P17927 2039 aa11.34□□□□□ -0.59
VPS28-210ENST00000529182 SETD2Q9BYW2 2564 aaPredicted RBP11.34□□□□□ -0.59
VPS28-210ENST00000529182 IGHV3-64DA0A0J9YX35 117 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 A0A1W2PQL4 384 aaPredicted RBP11.33□□□□□ -0.6
VPS28-210ENST00000529182 GGT3PA6NGU5 568 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 CD300LBA8K4G0 201 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 ZNF670-ZNF695F2Z2N8 137 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 SLC16A6O15403 523 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 MLNRO43193 412 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 XRCC2O43543 280 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 CLIC3O95833 236 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 HLA-DPB1P04440 258 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 CD55P08174 381 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 USF1P22415 310 aaPredicted RBP11.33□□□□□ -0.6
VPS28-210ENST00000529182 ATP6V1E1P36543 226 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 CRYBB2P43320 205 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 PSMA6P60900 246 aaKnown RBP11.33□□□□□ -0.6
VPS28-210ENST00000529182 ROM1Q03395 351 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 KRTAP1-1Q07627 177 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 LOXL1Q08397 574 aaPredicted RBP11.33□□□□□ -0.6
VPS28-210ENST00000529182 OCLNQ16625 522 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 TIGD6Q17RP2 521 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 SLC25A30Q5SVS4 291 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 OGFRL1Q5TC84 451 aaPredicted RBP11.33□□□□□ -0.6
VPS28-210ENST00000529182 ZNF679Q8IYX0 411 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 OR8B12Q8NGG6 310 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 OR56B2PQ8NGI1 322 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 DVL3Q92997 716 aaPredicted RBP11.33□□□□□ -0.6
VPS28-210ENST00000529182 RFKQ969G6 155 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 PPP1R14AQ96A00 147 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 SPSB4Q96A44 273 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 RNFT2Q96EX2 444 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 RDH12Q96NR8 316 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 DIRC2Q96SL1 478 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 MROQ9BYG7 248 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 EGLN1Q9GZT9 426 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 OR10A2Q9H208 303 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 NARFLQ9H6Q4 476 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 DCLRE1BQ9H816 532 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 SP140LQ9H930 580 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 FAM206AQ9NX38 181 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 DCAF16Q9NXF7 216 aa11.33□□□□□ -0.6
VPS28-210ENST00000529182 ANK3Q12955 4377 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms