RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 LOC100509620A0A075B734 347 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 CCDC160A6NGH7 325 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 FAM90A27PA6NNH2 459 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 H3BSA7 217 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 GABRPO00591 440 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 GATBO75879 557 aaKnown RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 IGLV3-1P01715 115 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 TTRP02766 147 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 ANXA2P07355 339 aaKnown RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 MAPK3P27361 379 aaPredicted RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 FGF9P31371 208 aaPredicted RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 SLC6A9P48067 706 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 IDH3GP51553 393 aaPredicted RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 HGFACQ04756 655 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 PPA1Q15181 289 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 CTF1Q16619 201 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 FOXB2Q5VYV0 432 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 PAMR1Q6UXH9 720 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 COLCA1Q6ZS62 124 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 FAM57BQ71RH2 274 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 ZNF808Q8N4W9 903 aaPredicted RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 CCDC54Q8NEL0 328 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 SLC30A7Q8NEW0 376 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 GPR148Q8TDV2 347 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 CA5BP1Q8WTZ4 195 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 RGP1Q92546 391 aaPredicted RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 PHYHIPQ92561 330 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 DGCR14Q96DF8 476 aaKnown RBP11.33□□□□□ -0.6
CPNE3-205ENST00000522240 MUCL1Q96DR8 90 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 PGAM5Q96HS1 289 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 OR10A2Q9H208 303 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 ESPL1Q14674 2120 aa11.33□□□□□ -0.6
CPNE3-205ENST00000522240 TRBV5-5A0A0J9YX44 114 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 LOC107986453A0A1B0GWG9 222 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 A0A1W2PR80 420 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 C5orf49A4QMS7 147 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 H3BMQ9 156 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 SLC22A1O15245 554 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 XRCC2O43543 280 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 GPX5O75715 221 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 SLC2A1P11166 492 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 CCL1P22362 96 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 RPS11P62280 158 aaKnown RBP eCLIP11.32□□□□□ -0.6
CPNE3-205ENST00000522240 FABP5Q01469 135 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 TAB1Q15750 504 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 XKRXQ6PP77 449 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 RPL3LQ92901 407 aaKnown RBP11.32□□□□□ -0.6
CPNE3-205ENST00000522240 TMEM203Q969S6 136 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 TRMT61AQ96FX7 289 aaKnown RBP11.32□□□□□ -0.6
CPNE3-205ENST00000522240 CHCHD6Q9BRQ6 235 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 RGCCQ9H4X1 137 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 OPA3Q9H6K4 179 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 CDH20Q9HBT6 801 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 EXOSC4Q9NPD3 245 aaKnown RBP11.32□□□□□ -0.6
CPNE3-205ENST00000522240 BRD7Q9NPI1 651 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 TXNL4BQ9NX01 149 aaKnown RBP11.32□□□□□ -0.6
CPNE3-205ENST00000522240 HHLA2Q9UM44 414 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 CENPEQ02224 2701 aa11.32□□□□□ -0.6
CPNE3-205ENST00000522240 LOC100506127A0A0U1RQW1 187 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 A0A1B0GVI7 797 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 CLEC18AA5D8T8 446 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 TRIM64BA6NI03 449 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 LCATP04180 440 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 CECR9P0C854 216 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 ZNF12P17014 697 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 SNAI3Q3KNW1 292 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 Q499Y3 187 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 SEZ6L2Q6UXD5 910 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 CLEC18BQ6UXF7 455 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 UNQ9370/PRO34162Q6UXP9 181 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 TMEM91Q6ZNR0 172 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 Q6ZSR3 168 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 MYPOPQ86VE0 399 aaPredicted RBP11.31□□□□□ -0.6
CPNE3-205ENST00000522240 CLEC18CQ8NCF0 446 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 OR13C5Q8NGS8 318 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 ABHD4Q8TB40 342 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 ITFG2Q969R8 447 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 APOBEC3DQ96AK3 386 aaPredicted RBP11.31□□□□□ -0.6
CPNE3-205ENST00000522240 C12orf43Q96C57 262 aaKnown RBP11.31□□□□□ -0.6
CPNE3-205ENST00000522240 KCNS3Q9BQ31 491 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 KCNJ16Q9NPI9 418 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 TBCCD1Q9NVR7 557 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 GSTK1Q9Y2Q3 226 aa11.31□□□□□ -0.6
CPNE3-205ENST00000522240 MYO7BQ6PIF6 2116 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 UTP20O75691 2785 aaKnown RBP11.3□□□□□ -0.6
CPNE3-205ENST00000522240 IGHV1-18A0A0C4DH31 117 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 A0A1B0GTI1 187 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 LOC390937A0A1W2PQ73 354 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 DHRS7CA6NNS2 312 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 ZNF879B4DU55 563 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 P2RY10O00398 339 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 TBX1O43435 398 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 ARL6IP5O75915 188 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 AGFG2O95081 481 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 CLDN14O95500 239 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 RAF1P04049 648 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 CELA3BP08861 270 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 UCHL1P09936 223 aa11.3□□□□□ -0.6
CPNE3-205ENST00000522240 CFL1P23528 166 aaKnown RBP11.3□□□□□ -0.6
CPNE3-205ENST00000522240 PCSK6P29122 969 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms