RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ACTA1P68133 377 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 IL5RAQ01344 420 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 ZNF829Q3KNS6 432 aaPredicted RBP12.17□□□□□ -0.46
NUP54-216ENST00000514901 OR2T2Q6IF00 324 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 DNM1P46Q6ZS02 220 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 USP51Q70EK9 711 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 PRSS45Q7RTY3 260 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 OR8G5Q8NG78 346 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 OR10H4Q8NGA5 316 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 OR13G1Q8NGZ3 307 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 UBASH3BQ8TF42 649 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 ITFG2Q969R8 447 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 SPSB4Q96A44 273 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 PGAM5Q96HS1 289 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 Q96MF0 132 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 EGLN1Q9GZT9 426 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 TPK1Q9H3S4 243 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 DECR2Q9NUI1 292 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 ZNF391Q9UJN7 358 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 IKZF2Q9UKS7 526 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 EXOGQ9Y2C4 368 aaKnown RBP12.17□□□□□ -0.46
NUP54-216ENST00000514901 N6AMT1Q9Y5N5 214 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 ACANP16112 2415 aa12.17□□□□□ -0.46
NUP54-216ENST00000514901 FLNAP21333 2647 aaKnown RBP12.16□□□□□ -0.46
NUP54-216ENST00000514901 TMEM269A0A1B0GVZ9 245 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 A0A1W2PQL4 384 aaPredicted RBP12.16□□□□□ -0.46
NUP54-216ENST00000514901 NDUFS8O00217 210 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 TBX1O43435 398 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 SPRY3O43610 288 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 KRT8P05787 483 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 DAOP14920 347 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 DDOSTP39656 456 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 MMP16P51512 607 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 ZNF92Q03936 586 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 RAB40BQ12829 278 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 CDK5R2Q13319 367 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 TIGD6Q17RP2 521 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 KLHL22Q53GT1 634 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 TMEM255AQ5JRV8 349 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 GLYATL3Q5SZD4 288 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 PLEKHG7Q6ZR37 379 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 FAM57BQ71RH2 274 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 KCTD20Q7Z5Y7 419 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 EGFL6Q8IUX8 553 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 ZNF786Q8N393 782 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 ZNF540Q8NDQ6 660 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 SPRYD4Q8WW59 207 aaPredicted RBP12.16□□□□□ -0.46
NUP54-216ENST00000514901 FAM168AQ92567 244 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 RDH5Q92781 318 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 SGK3Q96BR1 496 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 MRPL48Q96GC5 212 aaKnown RBP12.16□□□□□ -0.46
NUP54-216ENST00000514901 SLC22A4Q9H015 551 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 TMEM100Q9NV29 134 aa12.16□□□□□ -0.46
NUP54-216ENST00000514901 MRPS18AQ9NVS2 196 aaKnown RBP12.16□□□□□ -0.46
NUP54-216ENST00000514901 NOP16Q9Y3C1 178 aaKnown RBP12.16□□□□□ -0.46
NUP54-216ENST00000514901 CHD3Q12873 2000 aaKnown RBP12.16□□□□□ -0.46
NUP54-216ENST00000514901 IRGMA1A4Y4 181 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 GGT3PA6NGU5 568 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 METTL15A6NJ78 407 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 CD300LBA8K4G0 201 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 J3QRE1 110 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 TPD52L2O43399 206 aaKnown RBP12.15□□□□□ -0.46
NUP54-216ENST00000514901 ATP6V1G2O95670 118 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 FADS2O95864 444 aaKnown RBP12.15□□□□□ -0.46
NUP54-216ENST00000514901 IGHV1-46P01743 117 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 CD55P08174 381 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 DBTP11182 482 aaKnown RBP12.15□□□□□ -0.46
NUP54-216ENST00000514901 FOSL1P15407 271 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 ISL1P61371 349 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 ZNF91Q05481 1191 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 SNCBQ16143 134 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 C8orf59Q8N0T1 100 aaPredicted RBP12.15□□□□□ -0.46
NUP54-216ENST00000514901 ACBD7Q8N6N7 88 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 ZNF525Q8N782 197 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 APH1BQ8WW43 257 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 NRG4Q8WWG1 115 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 TFAP2CQ92754 450 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 LGALS12Q96DT0 336 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 REEP6Q96HR9 211 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 TBX5Q99593 518 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 SLC30A2Q9BRI3 323 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 MOB1AQ9H8S9 216 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 MSL2Q9HCI7 577 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 BRD7Q9NPI1 651 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 DLL4Q9NR61 685 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 INPP5EQ9NRR6 644 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 AASSQ9UDR5 926 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 MED13LQ71F56 2210 aa12.15□□□□□ -0.46
NUP54-216ENST00000514901 DAPL1A0PJW8 107 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 ZSCAN5BA6NJL1 495 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 PRR32B1ATL7 298 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 PSMD9O00233 223 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 WBP4O75554 376 aaKnown RBP12.14□□□□□ -0.47
NUP54-216ENST00000514901 LY6HO94772 140 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 APOL3O95236 402 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 CLIC3O95833 236 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 HPXP02790 462 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 TACSTD2P09758 323 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 CD99P14209 185 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 SLC25A16P16260 332 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms