RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	DAP	P51397	102 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	SEC61A1	P61619	476 aa	Known RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	SLC3A1	Q07837	685 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	KLHL12	Q53G59	568 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	TEX30	Q5JUR7	227 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	FAM201A	Q5SY85	155 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	FAHD2B	Q6P2I3	314 aa	Predicted RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	C1orf229	Q6ZS94	237 aa	Predicted RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	AMIGO2	Q86SJ2	522 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	PEG10	Q86TG7	708 aa	Known RBP	11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	CPO	Q8IVL8	374 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	FAHD2A	Q96GK7	314 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	KCNJ15	Q99712	375 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	ABHD6	Q9BV23	337 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	BRD7	Q9NPI1	651 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	TMEM100	Q9NV29	134 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	KLHDC2	Q9Y2U9	406 aa		11.19	□□□□□ -0.62
RNF4-215	ENST00000511843	TRAV20	A0A0B4J274	112 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	CD300LB	A8K4G0	201 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	TMEM178B	H3BS89	294 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	TBX1	O43435	398 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	AVP	P01185	164 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	HOXB6	P17509	224 aa	Known RBP	11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	CA6	P23280	308 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	PMEL	P40967	661 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	CX3CR1	P49238	355 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	BTG1	P62324	171 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	C1orf146	Q5VVC0	180 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	PRAMEF6	Q5VXH4	476 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	FAHD1	Q6P587	224 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	DRAM2	Q6UX65	266 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	TIGD4	Q8IY51	512 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	C19orf18	Q8NEA5	215 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	SPRYD4	Q8WW59	207 aa	Predicted RBP	11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	PLEKHA8	Q96JA3	519 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	METTL17	Q9H7H0	456 aa	Predicted RBP	11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	MARCH7	Q9H992	704 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	G6PC2	Q9NQR9	355 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	PAPOLB	Q9NRJ5	636 aa	Known RBP	11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	UFSP2	Q9NUQ7	469 aa		11.18	□□□□□ -0.62
RNF4-215	ENST00000511843	COL6A5	A8TX70	2615 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	LOC105371242	A0A075B767	164 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	GGT3P	A6NGU5	568 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	RGS9	O75916	674 aa	Predicted RBP	11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	PNP	P00491	289 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	ANXA2	P07355	339 aa	Known RBP	11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	ZFP36	P26651	326 aa	Known RBP	11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	HSD11B1	P28845	292 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	EPHA2	P29317	976 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	SRP9	P49458	86 aa	Known RBP	11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	RASSF2	P50749	326 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	BLVRA	P53004	296 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	HCCS	P53701	268 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	CRISP1	P54107	249 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	RPS7	P62081	194 aa	Known RBP	11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	MAB21L1	Q13394	359 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	OR8G1	Q15617	311 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	MPPED2	Q15777	294 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	ATP6AP1	Q15904	470 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	GFOD2	Q3B7J2	385 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	KRTAP24-1	Q3LI83	254 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	FAM57B	Q71RH2	274 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	BCDIN3D	Q7Z5W3	292 aa	Known RBP	11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	PHC2	Q8IXK0	858 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	OR56B2P	Q8NGI1	322 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	OR5K1	Q8NHB7	308 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	THEM6	Q8WUY1	208 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	RNF133	Q8WVZ7	376 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	REPIN1	Q9BWE0	567 aa	Known RBP	11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	TMPRSS13	Q9BYE2	586 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	SLC25A19	Q9HC21	320 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	TVP23B	Q9NYZ1	205 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843	PCDHB10	Q9UN67	800 aa		11.17	□□□□□ -0.62
RNF4-215	ENST00000511843		A0A1B0GWJ7	208 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	ATP5H	O75947	161 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	HMGN1	P05114	100 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	MRPL3	P09001	348 aa	Known RBP	11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	ANPEP	P15144	967 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	ADRA2C	P18825	462 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	PCMT1	P22061	227 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	SLC2A5	P22732	501 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	OPRL1	P41146	370 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	ZNF121	P58317	390 aa	Predicted RBP	11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	GRB2	P62993	217 aa	Known RBP	11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	APOF	Q13790	326 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	SNAPC1	Q16533	368 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	DCAF12L2	Q5VW00	463 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	LRRC28	Q86X40	367 aa	Predicted RBP	11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	LRTOMT	Q8WZ04	291 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	NRBF2	Q96F24	287 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	ADAT1	Q9BUB4	502 aa	Known RBP	11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	TTTY10	Q9BZA0	68 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	SEMA6A	Q9H2E6	1030 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	PPP1R3E	Q9H7J1	279 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	PATZ1	Q9HBE1	687 aa	Known RBP	11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	ZNF319	Q9P2F9	582 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843	AP4S1	Q9Y587	144 aa		11.16	□□□□□ -0.62
RNF4-215	ENST00000511843		A0A0G2JMP0	313 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843		A0A0X1KG70	313 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	CCDC182	A6NF36	153 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms