RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 FAM83CQ9BQN1 747 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 NIPSNAP3BQ9BS92 247 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 BCL2L10Q9HD36 194 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 AHSPQ9NZD4 102 aa10.81□□□□□ -0.68
LIMCH1-213ENST00000511496 NPIPB15A6NHN6 443 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 PRR32B1ATL7 298 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TMEM238C9JI98 176 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CNMDO75829 334 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CD160O95971 181 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 IL6RP08887 468 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 OR5AC1P0C628 307 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 HRH1P35367 487 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 IDH3GP51553 393 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 MRPL58Q14197 206 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 S100A7AQ86SG5 101 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TVP23CQ96ET8 276 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 GINS3Q9BRX5 216 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 ALKBH7Q9BT30 221 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 LSM5Q9Y4Y9 91 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TRIP12Q14669 1992 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 PLXNA3P51805 1871 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 M0QZ24 198 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 HIST1H1CP16403 213 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CTHP32929 405 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CCL20P78556 96 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 P2RY6Q15077 328 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 FAM78AQ5JUQ0 283 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 PLEKHS1Q5SXH7 462 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 COL5A1-AS1Q5SY13 56 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 SPRYD7Q5W111 196 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 P4HA3Q7Z4N8 544 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CMTM1Q8IZ96 169 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF480Q8WV37 535 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TSEN15Q8WW01 171 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TMEM18Q96B42 140 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 EFCAB11Q9BUY7 163 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 SH3BGRL3Q9H299 93 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TUBG2Q9NRH3 451 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 LHX3Q9UBR4 397 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 DOCK3Q8IZD9 2030 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 LOC100289279A0A1B0GTE1 492 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 NKX6-3A6NJ46 265 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 ADM5C9JUS6 153 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 STATHP02808 62 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CD33P20138 364 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 MMP16P51512 607 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TMEM182Q6ZP80 229 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF550Q7Z398 422 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 NUFIP2Q7Z417 695 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 LYG1Q8N1E2 194 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CYB561D1Q8N8Q1 229 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 IFI44Q8TCB0 444 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC2A12Q8TD20 617 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 GRHL3Q8TE85 626 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TMEM37Q8WXS4 190 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 SDSLQ96GA7 329 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 PRAP1Q96NZ9 151 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TBX15Q96SF7 602 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 CMKLR1Q99788 373 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF700Q9H0M5 742 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 TM7SF3Q9NS93 570 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 SIGLEC7Q9Y286 467 aa10.8□□□□□ -0.68
LIMCH1-213ENST00000511496 FTCDNL1E5RQL4 147 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 DANCRP0C864 163 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 PET100P0DJ07 73 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 IRF1P10914 325 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 MMP9P14780 707 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 CCKBRP32239 447 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 ATP6V1FQ16864 119 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF66Q6ZN08 573 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 ERGIC1Q969X5 290 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 COL26A1Q96A83 441 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 CCDC74AQ96AQ1 378 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 PTPN18Q99952 460 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 CABLES2Q9BTV7 478 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 MSL2Q9HCI7 577 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 ANKUB1A6NFN9 424 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 TLCD2A6NGC4 264 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 TRAPPC6AO75865 159 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 CD46P15529 392 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 FRKP42685 505 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 ARRB1P49407 418 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 FAM3AP98173 230 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 GAS6Q14393 721 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 NXPE4Q6UWF7 544 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 Q6ZVH6 145 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 FAM220AQ7Z4H9 259 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 MDGA2Q7Z553 956 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 C2orf15Q8WU43 125 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 CMBLQ96DG6 245 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 RCC1LQ96I51 464 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 FRRS1LQ9P0K9 344 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 SH3BGRL2Q9UJC5 107 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 DKKL1Q9UK85 242 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 LIPGQ9Y5X9 500 aa10.79□□□□□ -0.68
LIMCH1-213ENST00000511496 HSD17B6O14756 317 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 RPS27P42677 84 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC25A1P53007 311 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 SSBP1Q04837 148 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 TRAPPC6BQ86SZ2 158 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms