RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CSF3RQ99062 836 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 SORT1Q99523 831 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 NUDT22Q9BRQ3 303 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 RAB6CQ9H0N0 254 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 ABHD16BQ9H3Z7 469 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 CDCP1Q9H5V8 836 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 GREM2Q9H772 168 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 AGO3Q9H9G7 860 aaKnown RBP3.27□□□□□ -1.89
USP53-205ENST00000509769 NMUR1Q9HB89 426 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 IL21Q9HBE4 155 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 OR6C3Q9NZP0 311 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 B3GAT1Q9P2W7 334 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 GAGE2DQ9UEU5 116 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 FOXJ3Q9UPW0 622 aa3.27□□□□□ -1.89
USP53-205ENST00000509769 LOC105371267A0A1B0GV96 52 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 RBFOX3A6NFN3 312 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 CTDSP2O14595 271 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 CXCL11O14625 94 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 DUS4LO95620 317 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 GPANK1O95872 356 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 HLA-DRB1P01911 266 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 HEXAP06865 529 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 EIF1P41567 113 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 RAB9AP51151 201 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TMEM33P57088 247 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 SIRPAP78324 504 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 NRG1Q02297 640 aaPredicted RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 SRSF9Q13242 221 aaKnown RBP eCLIP3.26□□□□□ -1.89
USP53-205ENST00000509769 GABRA6Q16445 453 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 SPATA45Q537H7 98 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 SPANXN4Q5MJ08 99 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 CATSPEREQ5SY80 951 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 MORN1Q5T089 497 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 NOXRED1Q6NXP6 359 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 NPSR1Q6W5P4 371 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TMEM182Q6ZP80 229 aaPredicted RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 Q6ZSR9 355 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TAS1R3Q7RTX0 852 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 SERINC5Q86VE9 423 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 WDFY1Q8IWB7 410 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 LAX1Q8IWV1 398 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 OR2C3Q8N628 320 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 C19orf47Q8N9M1 422 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 OR1L4Q8NGR5 311 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 PRSS3P2Q8NHM4 247 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 RAB1CQ92928 201 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 MRPL38Q96DV4 380 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 RTP4Q96DX8 246 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TEPSINQ96N21 525 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 OSMRQ99650 979 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 FAM173AQ9BQD7 235 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 DERL1Q9BUN8 251 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TMEM59Q9BXS4 323 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 C20orf27Q9GZN8 174 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 SLC25A19Q9HC21 320 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 FGF20Q9NP95 211 aaPredicted RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 ANXA10Q9UJ72 324 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TUBD1Q9UJT1 453 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 NDRG2Q9UN36 371 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 LAMB4A4D0S4 1761 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ATRNL1Q5VV63 1379 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TRAV19A0A0A6YYK7 116 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 C17orf102A2RUQ5 167 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 C7orf77A4D0Y5 90 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 PSMB11A5LHX3 300 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 NPIPB15A6NHN6 443 aaPredicted RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 DLEU1O43261 78 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 MT-CO3P00414 261 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 HOXB5P09067 269 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 T-ENOLP0DO92 83 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 HKR1P10072 659 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 CDKN2AP42771 156 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 SOX2P48431 317 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 PRLHRP49683 370 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 FKBP1AP62942 108 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 PIN1Q13526 163 aaPredicted RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 NSDHLQ15738 373 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ADIPOQQ15848 244 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 GSG1Q2KHT4 349 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ODF4Q2M2E3 257 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 GGTA1PQ4G0N0 100 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 PRAMEF5Q5TYX0 476 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 PRAMEF6Q5VXH4 476 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TMEM198Q66K66 360 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ZNF626Q68DY1 528 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ABHD17CQ6PCB6 329 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 FAM26EQ8N5C1 309 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 IL22RA1Q8N6P7 574 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ARL14EPQ8N8R7 260 aaPredicted RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 OR10G8Q8NGN5 311 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 OR2I1PQ8NGU4 316 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ABHD4Q8TB40 342 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TMED6Q8WW62 240 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 ORAI1Q96D31 301 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 TCTN2Q96GX1 697 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 CELF6Q96J87 481 aaKnown RBP3.26□□□□□ -1.89
USP53-205ENST00000509769 PITX2Q99697 317 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 RARRES2Q99969 163 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 C19orf43Q9BQ61 176 aa3.26□□□□□ -1.89
USP53-205ENST00000509769 HRASLSQ9HDD0 168 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms