RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 STAC2Q6ZMT1 411 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 PRRT2Q7Z6L0 340 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 LCORQ96JN0 433 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 HAPLN2Q9GZV7 340 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 CALHM2Q9HA72 323 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 PISDQ9UG56 409 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 ZFP30Q9Y2G7 519 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 ITSN1Q15811 1721 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 NDUFS8O00217 210 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 NTSR1P30989 418 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SURF2Q15527 256 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 NSUN5P2Q63ZY6 315 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 RTL10Q7L3V2 364 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF511Q8NB15 262 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 OR5D18Q8NGL1 313 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 DTD2Q96FN9 168 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 ZC3HAV1LQ96H79 300 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 ZMAT3Q9HA38 289 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 BCL2L10Q9HD36 194 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 TAS2R4Q9NYW5 299 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 CGGBP1Q9UFW8 167 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 DMRT1Q9Y5R6 373 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 IFITM10A6NMD0 228 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 BCL3P20749 454 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 ADRA1AP35348 466 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 HRH1P35367 487 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 CLDN15P56746 228 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 FABP5Q01469 135 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 AWAT1Q58HT5 328 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 TMEM116Q8NCL8 245 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 OR10G8Q8NGN5 311 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 OR2T6Q8NHC8 308 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 TOE1Q96GM8 510 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 MS4A8Q9BY19 250 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 GABRA1P14867 456 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 S100A4P26447 101 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 APOBEC1P41238 236 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 EVX2Q03828 476 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SRYQ05066 204 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 UBE2V2Q15819 145 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF628Q5EBL2 1059 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 YOD1Q5VVQ6 348 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 TBPL2Q6SJ96 375 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 TRILQ7L0X0 811 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 MBD3L1Q8WWY6 194 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 POM121L2Q96KW2 1035 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 PMCHL2Q9BQD1 86 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 UTP23Q9BRU9 249 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SYT11Q9BT88 431 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 OCIAD1Q9NX40 245 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 RASL12Q9NYN1 266 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 UQCR10Q9UDW1 63 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SPEF2Q9C093 1822 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 PIAS2O75928 621 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SFT2D2O95562 160 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 DUS4LO95620 317 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC10A3P09131 477 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SMAGPQ0VAQ4 97 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 HYAL4Q2M3T9 481 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 PSMG4Q5JS54 123 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 FAM71E1Q6IPT2 247 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 MFSD12Q6NUT3 480 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 DPPA3Q6W0C5 159 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SLCO4C1Q6ZQN7 724 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 MEX3DQ86XN8 651 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 TMEM174Q8WUU8 243 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 EGLN1Q9GZT9 426 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF385DQ9H6B1 395 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 MTFP1Q9UDX5 166 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC17A4Q9Y2C5 497 aa10.22□□□□□ -0.77
LIMCH1-208ENST00000508501 HCRTR1O43613 425 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 CRHP06850 196 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 RIGQ13278 110 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 IGFBP7Q16270 282 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 TBC1D28Q2M2D7 210 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 FAM26DQ5JW98 314 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 DLEU7Q6UYE1 221 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 NUFIP2Q7Z417 695 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 PIANPQ8IYJ0 282 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 OR5A2Q8NGI9 324 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 OR5M9Q8NGP3 310 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 KIAA1456Q9P272 454 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 R4GMQ9 66 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 C7orf77A4D0Y5 90 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 OR2J3O76001 311 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 GDF1P27539 372 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 DLX1P56177 255 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF468Q5VIY5 522 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 FDX2Q6P4F2 183 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF813Q6ZN06 617 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 CHST14Q8NCH0 376 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 PIGTQ969N2 578 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 ERGIC1Q969X5 290 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 IGSF21Q96ID5 467 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 CXorf36Q9H7Y0 433 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 WASHC3Q9Y3C0 194 aa10.21□□□□□ -0.77
LIMCH1-208ENST00000508501 A0A087WV62 115 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 ZNF737O75373 536 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 NEURL1O76050 574 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 MPC2O95563 127 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms