RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 FAM71AQ8IYT1 594 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 C19orf18Q8NEA5 215 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 SLC26A10Q8NG04 563 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 OR56B2PQ8NGI1 322 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 OR1L1Q8NH94 360 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 PKMYT1Q99640 499 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 PKIBQ9C010 78 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 SLC17A7Q9P2U7 560 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 YARS2Q9Y2Z4 477 aaKnown RBP1.31□□□□□ -2.2
SMC4-227ENST00000497984 ZSWIM8A7E2V4 1837 aa1.31□□□□□ -2.2
SMC4-227ENST00000497984 CLOCKO15516 846 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 KLHL2O95198 593 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 MT-ND4P03905 459 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 ANXA5P08758 320 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 HRES1P13985 223 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 RRM2P31350 389 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 TGFBR2P37173 567 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 GZMMP51124 257 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 ATP5IP56385 69 aaPredicted RBP1.3□□□□□ -2.2
SMC4-227ENST00000497984 RAB10P61026 200 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 ACTR3P61158 418 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 BIKQ13323 160 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 NCF4Q15080 339 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 CHRNA6Q15825 494 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 PSMD5Q16401 504 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 DEFB134Q4QY38 66 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 KLHL12Q53G59 568 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 RTL4Q6ZR62 310 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 CMC1Q7Z7K0 106 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 SGPP2Q8IWX5 399 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 OR2Z1Q8NG97 314 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 SLC2A14Q8TDB8 520 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 ZNF606Q8WXB4 792 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 CPNE4Q96A23 557 aaPredicted RBP1.3□□□□□ -2.2
SMC4-227ENST00000497984 NRBF2Q96F24 287 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 RNF145Q96MT1 663 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 TMEM243Q9BU79 118 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 LINC00574Q9H8X3 128 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 TMEM165Q9HC07 324 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 COX16Q9P0S2 106 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 SAMHD1Q9Y3Z3 626 aaKnown RBP1.3□□□□□ -2.2
SMC4-227ENST00000497984 ZBED9Q6R2W3 1325 aa1.3□□□□□ -2.2
SMC4-227ENST00000497984 SMIM26A0A096LP01 95 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 ARPC4-TTLL3A0A0A6YYG9 625 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 TRBV9A0A0B4J1U6 114 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.29□□□□□ -2.2
SMC4-227ENST00000497984 J3QKU1 62 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 RAD1O60671 282 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 PALMO75781 387 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 CNMDO75829 334 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 FLOT1O75955 427 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 UQCRFS1P1P0C7P4 283 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 IL32P24001 234 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 PCK1P35558 622 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 EIF3EP60228 445 aaKnown RBP1.29□□□□□ -2.2
SMC4-227ENST00000497984 CYP24A1Q07973 514 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 BTN1A1Q13410 526 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 MRPL23Q16540 153 aaKnown RBP1.29□□□□□ -2.2
SMC4-227ENST00000497984 SP6Q3SY56 376 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 TMEM69Q5SWH9 247 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 SLC8B1Q6J4K2 584 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 APOBEC3HQ6NTF7 200 aaKnown RBP1.29□□□□□ -2.2
SMC4-227ENST00000497984 REEP3Q6NUK4 255 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 TBPL2Q6SJ96 375 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 LINC00336Q6ZUF6 198 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 SLC16A14Q7RTX9 510 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 FAM228AQ86W67 206 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 SLC22A9Q8IVM8 553 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 STK40Q8N2I9 435 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 OR52N1Q8NH53 320 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 NUBPLQ8TB37 319 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 ENKURQ8TC29 256 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 ACMSDQ8TDX5 336 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 HAUS1Q96CS2 278 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 GPR82Q96P67 336 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 KLF6Q99612 283 aaPredicted RBP1.29□□□□□ -2.2
SMC4-227ENST00000497984 HMGXB4Q9UGU5 601 aa1.29□□□□□ -2.2
SMC4-227ENST00000497984 SMCO2A6NFE2 343 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 SYCE1LA8MT33 242 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 H0Y8G0 127 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 SCELO95171 688 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 HPRT1P00492 218 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 RPN2P04844 631 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 TROVE2P10155 538 aaKnown RBP eCLIP1.28□□□□□ -2.21e-12■■■■■ 61.2
SMC4-227ENST00000497984 HSPD1P10809 573 aaKnown RBP1.28□□□□□ -2.2
SMC4-227ENST00000497984 ZNF35P13682 527 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 NELFEP18615 380 aaKnown RBP1.28□□□□□ -2.2
SMC4-227ENST00000497984 POLR2IP36954 125 aaKnown RBP1.28□□□□□ -2.2
SMC4-227ENST00000497984 SULT1E1P49888 294 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 ZNF121P58317 390 aaPredicted RBP1.28□□□□□ -2.2
SMC4-227ENST00000497984 DGCR6Q14129 220 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 TRAM2Q15035 370 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 XKR7Q5GH72 579 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 TPTE2P1Q5T6R2 138 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 C22orf42Q6IC83 251 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 CD300LGQ6UXG3 332 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 NANOGNBQ7Z5D8 188 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 MDP1Q86V88 176 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 CBLN2Q8IUK8 224 aa1.28□□□□□ -2.2
SMC4-227ENST00000497984 CMTM1Q8IZ96 169 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms