RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 H0YL77 283 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 TIPRLO75663 272 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 PRKACGP22612 351 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 MDH2P40926 338 aaKnown RBP12.72□□□□□ -0.37
USP39-217ENST00000491659 PRKXP51817 358 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 HNRNPA0Q13151 305 aaKnown RBP12.72□□□□□ -0.37
USP39-217ENST00000491659 SCGB2A2Q13296 93 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 TMEM155Q4W5P6 130 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 GLYATL3Q5SZD4 288 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 PLBD1Q6P4A8 553 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 SHFQ7M4L6 423 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 DPY19L4Q7Z388 723 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 OR2AE1Q8NHA4 323 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 ZNF420Q8TAQ5 688 aaPredicted RBP12.72□□□□□ -0.37
USP39-217ENST00000491659 NRBF2Q96F24 287 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 SIGLEC11Q96RL6 698 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 SLC22A4Q9H015 551 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 MMADHCQ9H3L0 296 aaPredicted RBP12.72□□□□□ -0.37
USP39-217ENST00000491659 TOR3AQ9H497 397 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 G6PC2Q9NQR9 355 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 N6AMT1Q9Y5N5 214 aa12.72□□□□□ -0.37
USP39-217ENST00000491659 CUBNO60494 3623 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 MXRA5Q9NR99 2828 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 A0A1B0GWJ7 208 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 GGT3PA6NGU5 568 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 CD300LBA8K4G0 201 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 TMEM178BH3BS89 294 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 PRODHO43272 600 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 XRCC2O43543 280 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 FOXH1O75593 365 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 APOC1P02654 83 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 HLA-DPB1P04440 258 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 SLC2A1P11166 492 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 CX3CR1P49238 355 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 CDK5Q00535 292 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 ZNF92Q03936 586 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 ZMYND11Q15326 602 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 KLHL12Q53G59 568 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 C1orf146Q5VVC0 180 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 DCAF12L2Q5VW00 463 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 MOGAT3Q86VF5 341 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 C1orf87Q8N0U7 546 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 RFLNBQ8N5W9 214 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 SPATA3Q8NHX4 192 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 ZMYND19Q96E35 227 aaPredicted RBP12.71□□□□□ -0.37
USP39-217ENST00000491659 ADAT1Q9BUB4 502 aaKnown RBP12.71□□□□□ -0.37
USP39-217ENST00000491659 SP140LQ9H930 580 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 MARCH7Q9H992 704 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 SLC25A19Q9HC21 320 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 PAPOLBQ9NRJ5 636 aaKnown RBP12.71□□□□□ -0.37
USP39-217ENST00000491659 METRNQ9UJH8 293 aa12.71□□□□□ -0.37
USP39-217ENST00000491659 J3QLI3 93 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 TBX1O43435 398 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 CYB5R3P00387 301 aaPredicted RBP12.7□□□□□ -0.38
USP39-217ENST00000491659 ANXA2P07355 339 aaKnown RBP12.7□□□□□ -0.38
USP39-217ENST00000491659 IRF2P14316 349 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 GATA3P23771 443 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 CD200P41217 278 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 GATA4P43694 442 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 RPS7P62081 194 aaKnown RBP12.7□□□□□ -0.38
USP39-217ENST00000491659 LCN2P80188 198 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 OR8G1Q15617 311 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 ZNF181Q2M3W8 571 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 SLC35D3Q5M8T2 416 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 LRRC28Q86X40 367 aaPredicted RBP12.7□□□□□ -0.38
USP39-217ENST00000491659 TIGD4Q8IY51 512 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 CELF2-AS1Q8N7Q2 184 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 OR11L1Q8NGX0 322 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 OR5K1Q8NHB7 308 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 RNF133Q8WVZ7 376 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 ABHD6Q9BV23 337 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 REPIN1Q9BWE0 567 aaKnown RBP12.7□□□□□ -0.38
USP39-217ENST00000491659 PRRG3Q9BZD7 231 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 METTL17Q9H7H0 456 aaPredicted RBP12.7□□□□□ -0.38
USP39-217ENST00000491659 NTN4Q9HB63 628 aa12.7□□□□□ -0.38
USP39-217ENST00000491659 PATZ1Q9HBE1 687 aaKnown RBP12.7□□□□□ -0.38
USP39-217ENST00000491659 IGHV3-64DA0A0J9YX35 117 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 TCF21O43680 179 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 SELENOFO60613 162 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 LYNP07948 512 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 H2BFMP0C1H6 154 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 CA6P23280 308 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 RBMXP38159 391 aaKnown RBP12.69□□□□□ -0.38
USP39-217ENST00000491659 ATP6AP1Q15904 470 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 TIGD6Q17RP2 521 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 LIPNQ5VXI9 398 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 FAHD1Q6P587 224 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 RHOUQ7L0Q8 258 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 CPOQ8IVL8 374 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 PHC2Q8IXK0 858 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 ZNF454Q8N9F8 522 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 ERGIC1Q969X5 290 aa12.69□□□□□ -0.38
USP39-217ENST00000491659 UTP4Q969X6 686 aaKnown RBP12.69□□□□□ -0.38
USP39-217ENST00000491659 MRPL15Q9P015 296 aaKnown RBP12.69□□□□□ -0.38
USP39-217ENST00000491659 FBN1P35555 2871 aaKnown RBP12.69□□□□□ -0.38
USP39-217ENST00000491659 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.68□□□□□ -0.38
USP39-217ENST00000491659 C5orf63A6NC05 138 aa12.68□□□□□ -0.38
USP39-217ENST00000491659 CEACAM18A8MTB9 384 aa12.68□□□□□ -0.38
USP39-217ENST00000491659 GMDSO60547 372 aa12.68□□□□□ -0.38
USP39-217ENST00000491659 CIB2O75838 187 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms