RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SNAPC1Q16533 368 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 DRAM2Q6UX65 266 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 PGAP1Q75T13 922 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 CXXC5Q7LFL8 322 aaKnown RBP15.28■□□□□ 0.04
COL9A3-214ENST00000490398 PARP8Q8N3A8 854 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 OR13G1Q8NGZ3 307 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 PYDC1Q8WXC3 89 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 RAB1CQ92928 201 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 DVL3Q92997 716 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-214ENST00000490398 REPIN1Q9BWE0 567 aaKnown RBP15.28■□□□□ 0.04
COL9A3-214ENST00000490398 GABARAPL1Q9H0R8 117 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 TMEFF2Q9UIK5 374 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-214ENST00000490398 NPTNQ9Y639 398 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 ISPDA4D126 451 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 CD300LBA8K4G0 201 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 B4DSR2 109 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF205O95201 554 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 MSMBP08118 114 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 POLR2IP36954 125 aaKnown RBP15.27■□□□□ 0.04
COL9A3-214ENST00000490398 OPRL1P41146 370 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 CX3CR1P49238 355 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 MMP16P51512 607 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 DVL1P1P54792 670 aaPredicted RBP15.27■□□□□ 0.04
COL9A3-214ENST00000490398 MAB21L1Q13394 359 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 APOFQ13790 326 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 ZMYND11Q15326 602 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 KDM4DQ6B0I6 523 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 PRSS45Q7RTY3 260 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 MRPL21Q7Z2W9 205 aaKnown RBP15.27■□□□□ 0.04
COL9A3-214ENST00000490398 OTOSQ8NHW6 89 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 KRT84Q9NSB2 600 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 TMEM100Q9NV29 134 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 HIF1ANQ9NWT6 349 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 UBAP1Q9NZ09 502 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 DNAJC27Q9NZQ0 273 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 PPP1R3CQ9UQK1 317 aa15.27■□□□□ 0.04
COL9A3-214ENST00000490398 TANC2Q9HCD6 1990 aa15.27■□□□□ 0.03
COL9A3-214ENST00000490398 PRR32B1ATL7 298 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 PRODHO43272 600 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 CIB2O75838 187 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 CYB5R3P00387 301 aaPredicted RBP15.26■□□□□ 0.03
COL9A3-214ENST00000490398 MRPL3P09001 348 aaKnown RBP15.26■□□□□ 0.03
COL9A3-214ENST00000490398 SBK2P0C263 348 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 TNFRSF1AP19438 455 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 CA6P23280 308 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 RPS7P62081 194 aaKnown RBP15.26■□□□□ 0.03
COL9A3-214ENST00000490398 KPNB1Q14974 876 aaKnown RBP15.26■□□□□ 0.03
COL9A3-214ENST00000490398 FAM201AQ5SY85 155 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 PRAMEF6Q5VXH4 476 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 SLX4IPQ5VYV7 408 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 CCDC121Q6ZUS5 278 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 MOGAT3Q86VF5 341 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 DNAJC9Q8WXX5 260 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 TMEM186Q96B77 213 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 SGK3Q96BR1 496 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 TIMD4Q96H15 378 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 PLEKHA8Q96JA3 519 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 PKP2Q99959 881 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 GAL3ST1Q99999 423 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 PPP1R3EQ9H7J1 279 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 LPAR3Q9UBY5 353 aa15.26■□□□□ 0.03
COL9A3-214ENST00000490398 SAC3D1A6NKF1 404 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 ZAR1LA6NP61 321 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 H3BNX3 289 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 TMEM178BH3BS89 294 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 PLPP2O43688 288 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 ANXA2P07355 339 aaKnown RBP15.25■□□□□ 0.03
COL9A3-214ENST00000490398 ZNF121P58317 390 aaPredicted RBP15.25■□□□□ 0.03
COL9A3-214ENST00000490398 ESRRGP62508 458 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 EFNB1P98172 346 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 SRSF2Q01130 221 aaKnown RBP15.25■□□□□ 0.03
COL9A3-214ENST00000490398 LRRN1Q6UXK5 716 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 FAM57BQ71RH2 274 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 SHFQ7M4L6 423 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 GLCCI1Q86VQ1 547 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 ZDHHC13Q8IUH4 622 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 THEM6Q8WUY1 208 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 SPRYD4Q8WW59 207 aaPredicted RBP15.25■□□□□ 0.03
COL9A3-214ENST00000490398 TEAD3Q99594 435 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 CIB1Q99828 191 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 BRD7Q9NPI1 651 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 OAZ3Q9UMX2 235 aa15.25■□□□□ 0.03
COL9A3-214ENST00000490398 COL6A5A8TX70 2615 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 TBX1O43435 398 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 AVPP01185 164 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 LYNP07948 512 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 ZFP36P26651 326 aaKnown RBP15.24■□□□□ 0.03
COL9A3-214ENST00000490398 HSD11B1P28845 292 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 ACTR3P61158 418 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 SEC61A1P61619 476 aaKnown RBP15.24■□□□□ 0.03
COL9A3-214ENST00000490398 GRB2P62993 217 aaKnown RBP15.24■□□□□ 0.03
COL9A3-214ENST00000490398 SLC3A1Q07837 685 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 MPPED2Q15777 294 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 SLC35D3Q5M8T2 416 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 C12orf73Q69YU5 71 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 C1orf229Q6ZS94 237 aaPredicted RBP15.24■□□□□ 0.03
COL9A3-214ENST00000490398 RFLNBQ8N5W9 214 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 TCEANCQ8N8B7 351 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 OR56B2PQ8NGI1 322 aa15.24■□□□□ 0.03
COL9A3-214ENST00000490398 OR51F2Q8NH61 342 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms