RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ZNF540Q8NDQ6 660 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 OR8G5Q8NG78 346 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 OR10AD1Q8NGE0 317 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 OR8J1Q8NGP2 316 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 DIRC2Q96SL1 478 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 MBOAT4Q96T53 435 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 EGLN1Q9GZT9 426 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 NARFLQ9H6Q4 476 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 CACNG2Q9Y698 323 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 TANC2Q9HCD6 1990 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 YLPM1P49750 1951 aaKnown RBP12.53□□□□□ -0.4
USP4-212ENST00000486549 IQCF6A8MYZ5 107 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 PPIHO43447 177 aaKnown RBP12.53□□□□□ -0.4
USP4-212ENST00000486549 APOC1P02654 83 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 ADH4P08319 380 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 ALOX5APP20292 161 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 TNFSF4P23510 183 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 MRPS11P82912 194 aaKnown RBP12.53□□□□□ -0.4
USP4-212ENST00000486549 HNRNPA0Q13151 305 aaKnown RBP12.53□□□□□ -0.4
USP4-212ENST00000486549 RIN1Q13671 783 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 TRIP10Q15642 601 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 TMEM249Q2WGJ8 235 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 SLC35F2Q8IXU6 374 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 RFLNBQ8N5W9 214 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 OR51G2Q8NGK0 314 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 SPRYD4Q8WW59 207 aaPredicted RBP12.53□□□□□ -0.4
USP4-212ENST00000486549 UBE2FQ969M7 185 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 PGAM5Q96HS1 289 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 HRASLS5Q96KN8 279 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 ADGRL4Q9HBW9 690 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 COPS3Q9UNS2 423 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 LRP12Q9Y561 859 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 GMPPBQ9Y5P6 360 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 ABCA2Q9BZC7 2435 aa12.53□□□□□ -0.4
USP4-212ENST00000486549 NAV3Q8IVL0 2385 aa12.52□□□□□ -0.4
USP4-212ENST00000486549 ABCA1O95477 2261 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 LRP5LA4QPB2 252 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 GGT3PA6NGU5 568 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 H0YL77 283 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 XRCC2O43543 280 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 RP2O75695 350 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 APOL3O95236 402 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 CD55P08174 381 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 ANPEPP15144 967 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 CRYBB2P43320 205 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 KRTAP1-1Q07627 177 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 TIGD6Q17RP2 521 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 LRRC36Q1X8D7 754 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 HFEQ30201 348 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 AVPI1Q5T686 147 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 KCTD18Q6PI47 426 aaPredicted RBP12.52□□□□□ -0.41
USP4-212ENST00000486549 RHOUQ7L0Q8 258 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 GALNT4Q8N4A0 578 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 OR13G1Q8NGZ3 307 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 ITLN1Q8WWA0 313 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 CCL17Q92583 94 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 OR2V2Q96R30 315 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 TBX5Q99593 518 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 SP140LQ9H930 580 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 WARS2Q9UGM6 360 aaKnown RBP12.52□□□□□ -0.41
USP4-212ENST00000486549 IKZF2Q9UKS7 526 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 TMEM14AQ9Y6G1 99 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 DYSFO75923 2080 aa12.52□□□□□ -0.41
USP4-212ENST00000486549 NSD1Q96L73 2696 aaPredicted RBP12.52□□□□□ -0.41
USP4-212ENST00000486549 IGHV3-64DA0A0J9YX35 117 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 CD300LBA8K4G0 201 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 PRR32B1ATL7 298 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 MLNRO43193 412 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 HLA-DPB1P04440 258 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 SBK2P0C263 348 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 HTR1FP30939 366 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 RBMXP38159 391 aaKnown RBP12.51□□□□□ -0.41
USP4-212ENST00000486549 CHN2P52757 468 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 PSMA6P60900 246 aaKnown RBP12.51□□□□□ -0.41
USP4-212ENST00000486549 CXCR4P61073 352 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 MVKQ03426 396 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 LPCAT4Q643R3 524 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 ASB17Q8WXJ9 295 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 REEP6Q96HR9 211 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 SLC30A2Q9BRI3 323 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 REPIN1Q9BWE0 567 aaKnown RBP12.51□□□□□ -0.41
USP4-212ENST00000486549 MROQ9BYG7 248 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 OR10A2Q9H208 303 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 TMEM100Q9NV29 134 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 CLN6Q9NWW5 311 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 AASSQ9UDR5 926 aa12.51□□□□□ -0.41
USP4-212ENST00000486549 CLDN25C9JDP6 229 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 ZNF670-ZNF695F2Z2N8 137 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 F5H5P2 479 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 CD5LO43866 347 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 ENTPD6O75354 484 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 ZNF16P17020 682 aaPredicted RBP12.5□□□□□ -0.41
USP4-212ENST00000486549 TNFRSF1AP19438 455 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 PEX2P28328 305 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 ATP6V1E1P36543 226 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 TMEM33P57088 247 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 ZNF322Q6U7Q0 402 aaPredicted RBP12.5□□□□□ -0.41
USP4-212ENST00000486549 PRSS45Q7RTY3 260 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 OR56B2PQ8NGI1 322 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 OR52H1Q8NGJ2 320 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms