RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 WDR38Q5JTN6 314 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 GLYATL3Q5SZD4 288 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 SPATA46Q5T0L3 261 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 XAF1Q6GPH4 301 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 RPL22L1Q6P5R6 122 aaKnown RBP10.54□□□□□ -0.72
SDC1-206ENST00000482879 ZNF704Q6ZNC4 412 aaPredicted RBP10.54□□□□□ -0.72
SDC1-206ENST00000482879 KCTD8Q6ZWB6 473 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 ZNF367Q7RTV3 350 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 C1orf174Q8IYL3 243 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 ELMOD2Q8IZ81 293 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 PRSS35Q8N3Z0 413 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 ZFP41Q8N8Y5 198 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 NUP37Q8NFH4 326 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 OR8B12Q8NGG6 310 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 SLC25A40Q8TBP6 338 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 NEUROG1Q92886 237 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 SGK3Q96BR1 496 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 POFUT1Q9H488 388 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 FRRS1LQ9P0K9 344 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 ST6GALNAC2Q9UJ37 374 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 DSCAMO60469 2012 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 TRBV2A0A0J9YWF9 115 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 PNMA8CA0A1B0GUJ8 204 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 VSTM5A8MXK1 200 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 E7EQL1 145 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 OGG1O15527 345 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 XRCC2O43543 280 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 TTRP02766 147 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 TUBG1P23258 451 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 CCR9P51686 369 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 ZNF92Q03936 586 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 ACSM1Q08AH1 577 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 CDK5R1Q15078 307 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 TIGD6Q17RP2 521 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 ODF4Q2M2E3 257 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 ZNF718Q3SXZ3 478 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 ZNF672Q499Z4 452 aaPredicted RBP10.53□□□□□ -0.72
SDC1-206ENST00000482879 RGS7BPQ6MZT1 257 aaPredicted RBP10.53□□□□□ -0.72
SDC1-206ENST00000482879 OR2AE1Q8NHA4 323 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 LILRB1Q8NHL6 650 aaPredicted RBP10.53□□□□□ -0.72
SDC1-206ENST00000482879 FCGR1BQ92637 280 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 AKAP1Q92667 903 aaKnown RBP eCLIP10.53□□□□□ -0.72
SDC1-206ENST00000482879 REEP6Q96HR9 211 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 MGLLQ99685 303 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 OR2J1Q9GZK6 312 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 VCX3AQ9NNX9 186 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 ISYNA1Q9NPH2 558 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 TUBG2Q9NRH3 451 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 CA10Q9NS85 328 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 CISD1Q9NZ45 108 aaKnown RBP10.53□□□□□ -0.72
SDC1-206ENST00000482879 CMAHPQ9Y471 501 aa10.53□□□□□ -0.72
SDC1-206ENST00000482879 SIRT4Q9Y6E7 314 aaPredicted RBP10.53□□□□□ -0.72
SDC1-206ENST00000482879 A0A0U1RQV5 110 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 FAM221AA4D161 298 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 TRIM64CA6NLI5 447 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 OR4C45A6NMZ5 311 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 P2RY10O00398 339 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 CTAG2O75638 210 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 INMTO95050 263 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 SMIM18P0DKX4 95 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 CELP19835 753 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 GCH1P30793 250 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 FABP6P51161 128 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 BDH1Q02338 343 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 SLC3A1Q07837 685 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 MLLT11Q13015 90 aaPredicted RBP10.52□□□□□ -0.73
SDC1-206ENST00000482879 HLXQ14774 488 aaPredicted RBP10.52□□□□□ -0.73
SDC1-206ENST00000482879 NEDD8Q15843 81 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 UBE2UQ5VVX9 321 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 DMKNQ6E0U4 476 aaPredicted RBP10.52□□□□□ -0.73
SDC1-206ENST00000482879 MRPL21Q7Z2W9 205 aaKnown RBP10.52□□□□□ -0.73
SDC1-206ENST00000482879 COMMD2Q86X83 199 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 RDH10Q8IZV5 341 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 ZNF676Q8N7Q3 588 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 OR5AK2Q8NH90 309 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 OR51E1Q8TCB6 317 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 KLF14Q8TD94 323 aaPredicted RBP10.52□□□□□ -0.73
SDC1-206ENST00000482879 TMEM171Q8WVE6 324 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 CMBLQ96DG6 245 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 MARS2Q96GW9 593 aaKnown RBP10.52□□□□□ -0.73
SDC1-206ENST00000482879 MRPS26Q9BYN8 205 aaKnown RBP10.52□□□□□ -0.73
SDC1-206ENST00000482879 COMMD4Q9H0A8 199 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 RGCCQ9H4X1 137 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 ZNF442Q9H7R0 627 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 GPR84Q9NQS5 396 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 FZR1Q9UM11 496 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 ARFGEF3Q5TH69 2177 aa10.52□□□□□ -0.73
SDC1-206ENST00000482879 A0A1B0GVI7 797 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 A0A1W2PPR1 153 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 TMEM212A6NML5 194 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 H3BSH0 61 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 ZFPL1O95159 310 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 OR4A8P0C604 315 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 UBCP0CG48 685 aaKnown RBP10.51□□□□□ -0.73
SDC1-206ENST00000482879 RAC2P15153 192 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 CFL1P23528 166 aaKnown RBP10.51□□□□□ -0.73
SDC1-206ENST00000482879 PSMB9P28065 219 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 APOBEC3AP31941 199 aaPredicted RBP10.51□□□□□ -0.73
SDC1-206ENST00000482879 MPV17P39210 176 aa10.51□□□□□ -0.73
SDC1-206ENST00000482879 PRSS12P56730 875 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms