RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SCGB2A2Q13296 93 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 ACSM5Q6NUN0 579 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 RPL13AP3Q6NVV1 102 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 C1orf94Q6P1W5 598 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 SHQ1Q6PI26 577 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 ZNF620Q6ZNG0 422 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 PEG10Q86TG7 708 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 PHC2Q8IXK0 858 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 OR6V1Q8N148 313 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 ARHGAP24Q8N264 748 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 LINC00471Q8N535 108 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 RFLNBQ8N5W9 214 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 TEX29Q8N6K0 151 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 GJC3Q8NFK1 279 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 OR52L1Q8NGH7 329 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 OR5L1Q8NGL2 311 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 CCL17Q92583 94 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 POP5Q969H6 163 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 SAMD8Q96LT4 415 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 TSSK2Q96PF2 358 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 NMNAT3Q96T66 252 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 GAL3ST1Q99999 423 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 HDHD2Q9H0R4 259 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 MUC13Q9H3R2 512 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 POFUT1Q9H488 388 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 LPAR2Q9HBW0 351 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 MSL2Q9HCI7 577 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 ACTR3BQ9P1U1 418 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 KLHL21Q9UJP4 597 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 PURGQ9UJV8 347 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 STARD10Q9Y365 291 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 WIPI2Q9Y4P8 454 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 LHFPL6Q9Y693 200 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 CACNG2Q9Y698 323 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 SVEP1Q4LDE5 3571 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 IGLV1-36A0A0B4J1U3 117 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 ISPDA4D126 451 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 TNFRSF11BO00300 401 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 DCTN6O00399 190 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 SURF4O15260 269 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 TCF21O43680 179 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 GPANK1O95872 356 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 PNPP00491 289 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 IGHV2-5P01817 119 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 HLA-DQA2P01906 255 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 ATP6V1B2P21281 511 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 HIST1H3AP68431 136 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 COX10Q12887 443 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 MEP1BQ16820 701 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 KRTAP24-1Q3LI83 254 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 SLC36A3Q495N2 470 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 HIST2H3PS2Q5TEC6 136 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 LIPNQ5VXI9 398 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 OTPQ5XKR4 325 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 PGBD2Q6P3X8 592 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 CORO6Q6QEF8 472 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 FBXW12Q6X9E4 464 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 HIST2H3AQ71DI3 136 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 ZBTB46Q86UZ6 589 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 FITM2Q8N6M3 262 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 SDR9C7Q8NEX9 313 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 SLC26A10Q8NG04 563 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 OR2Z1Q8NG97 314 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 OR52E2Q8NGJ4 325 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 OR2AJ1Q8NGZ0 328 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 OR4K13Q8NH42 304 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 SLC7A6Q92536 515 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 PTP4A1Q93096 173 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 APOBEC3DQ96AK3 386 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 HAVCR1Q96D42 359 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 CMBLQ96DG6 245 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 NSL1Q96IY1 281 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 CCT8L2Q96SF2 557 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 COQ7Q99807 217 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 ARPC5LQ9BPX5 153 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 TRIM15Q9C019 465 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 MAGIXQ9H6Y5 334 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 METTL17Q9H7H0 456 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 RPRD1BQ9NQG5 326 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 AURKAIP1Q9NWT8 199 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 PTTG3PQ9NZH4 202 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 B9D1Q9UPM9 204 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 LYVE1Q9Y5Y7 322 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 CDH10Q9Y6N8 788 aa5.74□□□□□ -1.49
CCDC88A-213ENST00000476903 A0A0G2JMP0 313 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 A0A0X1KG70 313 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 KRTAP23-1A1A580 65 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 OR6C68A6NDL8 312 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 J3QLI3 93 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 BHLHE40O14503 412 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 PLPP2O43688 288 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 CCNB2O95067 398 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 FAM107AO95990 144 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 CALB2P22676 271 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 GATA3P23771 443 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 RPS19P39019 145 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 MAGEA2P43356 314 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 ECH1Q13011 328 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms