RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GASTP01350 101 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 PPIAL4GP0DN37 164 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 IGHV4-38-2P0DP08 117 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 ZNF823P16415 610 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 GNB2P62879 340 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 ZNF92Q03936 586 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 PPP1R8Q12972 351 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 MPPED2Q15777 294 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 PCK2Q16822 640 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 RASSF6Q6ZTQ3 369 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 MRPL21Q7Z2W9 205 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 LNX2Q8N448 690 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 LINC00471Q8N535 108 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 AQP11Q8NBQ7 271 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 OR2T4Q8NH00 348 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 OR2AE1Q8NHA4 323 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 DUX5Q96PT3 197 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 TBC1D23Q9NUY8 699 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 CD300LBA8K4G0 201 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 CCNB2O95067 398 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 CA6P23280 308 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 PITPNBP48739 271 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 CRMP1Q14194 572 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 GLYATL3Q5SZD4 288 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 LYPD2Q6UXB3 125 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 RBMS3Q6XE24 437 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 C9orf139Q6ZV77 190 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 DCXRQ7Z4W1 244 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 PARP8Q8N3A8 854 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 FITM2Q8N6M3 262 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 C19orf18Q8NEA5 215 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 OR8B3Q8NGG8 313 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 OR4Q3Q8NH05 313 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 SPRYD4Q8WW59 207 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 ERGIC1Q969X5 290 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 UPRTQ96BW1 309 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 ZMYND19Q96E35 227 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 OR8B2Q96RD0 313 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 ADAT1Q9BUB4 502 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 NMNAT2Q9BZQ4 307 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 UFSP2Q9NUQ7 469 aa15.68■□□□□ 0.1
CCDC88B-206ENST00000473405 PTBP3O95758 552 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 PLATP00750 562 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 GYPBP06028 91 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 PRTN3P24158 256 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 OR8G1Q15617 311 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 LCN8Q6JVE9 175 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 DRAM2Q6UX65 266 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 BTNL3Q6UXE8 466 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 LRRN1Q6UXK5 716 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 ZNF841Q6ZN19 808 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 DCDC5Q6ZRR9 648 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 NLRC3Q7RTR2 1065 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 RAB40AQ8WXH6 277 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 PLEKHA8Q96JA3 519 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 MAGIXQ9H6Y5 334 aa15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 SOX21Q9Y651 276 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-206ENST00000473405 IGHV3OR16-10A0A075B7F0 116 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 PHYHO14832 338 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 SOX14O95416 240 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 SPARCP09486 303 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 HKR1P10072 659 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 CLUP10909 449 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 IRF2P14316 349 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 SPI1P17947 270 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 EGR1P18146 543 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 PSMB10P40306 273 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 ENTPD1P49961 510 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 ZNF511Q8NB15 262 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 OR11L1Q8NGX0 322 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 COPS4Q9BT78 406 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 TSSK6Q9BXA6 273 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 DGCR6LQ9BY27 220 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 ARMC1Q9NVT9 282 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 CLN8Q9UBY8 286 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 U3KQV3 271 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 CMYA5Q8N3K9 4069 aa15.66■□□□□ 0.1
CCDC88B-206ENST00000473405 TRAV40A0A0B4J280 105 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 KIR2DS1A0A191URI9 304 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 C22orf46C9J442 243 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 GMDSO60547 372 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 SLC2A1P11166 492 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 PRKXP51817 358 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 MNAT1P51948 309 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 SLC25A1P53007 311 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 MS4A2Q01362 244 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 BAMBIQ13145 260 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 WDR25Q64LD2 544 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 OR2T5Q6IEZ7 315 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 OR2T33Q8NG76 320 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 OR2T29Q8NH02 315 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 SLAMF6Q96DU3 332 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 MS4A7Q9GZW8 240 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 SLC22A4Q9H015 551 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 MUC13Q9H3R2 512 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 ZMAT3Q9HA38 289 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 MRPL15Q9P015 296 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 CTSZQ9UBR2 303 aa15.65■□□□□ 0.1
CCDC88B-206ENST00000473405 B2RBV5 119 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 ZNF593O00488 134 aaPredicted RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms