RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CMAHPQ9Y471 501 aa11.19□□□□□ -0.62
VPS13D-205ENST00000473099 V9GY05 133 aa11.19□□□□□ -0.62
VPS13D-205ENST00000473099 PCNX1Q96RV3 2341 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 A0A1B0GTI1 187 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 A0A1W2PPK0 400 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 ANXA2P2A6NMY6 339 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 J3QW42 95 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 MSTNO14793 375 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 RGS5O15539 181 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 XRCC2O43543 280 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 HLA-HP01893 362 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 SERPINA5P05154 406 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 INHBBP09529 407 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 GLI4P10075 376 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 ZNF20P17024 532 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 APLNRP35414 380 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 ETV6P41212 452 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 CASP6P55212 293 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 SCAND1P57086 179 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 FOXF2Q12947 444 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 GABRA6Q16445 453 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 SPANXN2Q5MJ10 180 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 TMEM211Q6ICI0 200 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 Q6ZSR3 168 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 PGAP1Q75T13 922 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 NKAIN3Q8N8D7 197 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 PLPP7Q8NBV4 271 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 OR5D14Q8NGL3 314 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 FGFBP3Q8TAT2 258 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 OR51E1Q8TCB6 317 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 AKAP1Q92667 903 aaKnown RBP eCLIP11.18□□□□□ -0.62
VPS13D-205ENST00000473099 BORCS5Q969J3 196 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 PPP1R14AQ96A00 147 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 C1QTNF5Q9BXJ0 243 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 PLEKHA1Q9HB21 404 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 PLGRKTQ9HBL7 147 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 PALMDQ9NP74 551 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 GPR84Q9NQS5 396 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 B3GNT2Q9NY97 397 aa11.18□□□□□ -0.62
VPS13D-205ENST00000473099 A0A0G2JK05 382 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 AIPO00170 330 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 TBX1O43435 398 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 DHRS3O75911 302 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 TOXO94900 526 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 LCATP04180 440 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 ERCC1P07992 297 aaPredicted RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 DBHP09172 617 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 PATE4P0C8F1 98 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 SLC2A1P11166 492 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 EPXP11678 715 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 IGFBP3P17936 291 aaPredicted RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 STOMP27105 288 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 CFPP27918 469 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 CAPZA1P52907 286 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 CAV3P56539 151 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 MRPL49Q13405 166 aaKnown RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 DCTN2Q13561 401 aaKnown RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 CEP78Q5JTW2 689 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 IDNKQ5T6J7 187 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 LRRTM1Q86UE6 522 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 ST6GALNAC3Q8NDV1 305 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 OR1J2Q8NGS2 313 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 PP6455Q8WZ26 134 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 FOXRED1Q96CU9 486 aaPredicted RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 CMTM3Q96MX0 182 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 USB1Q9BQ65 265 aaKnown RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 OPA3Q9H6K4 179 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 ZNF629Q9UEG4 869 aaPredicted RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 AMDHD2Q9Y303 409 aa11.17□□□□□ -0.62
VPS13D-205ENST00000473099 AK6Q9Y3D8 172 aaKnown RBP11.17□□□□□ -0.62
VPS13D-205ENST00000473099 POLEQ07864 2286 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 SMIM30A4D0T7 59 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 IFITM5A6NNB3 132 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 E9PLN8 166 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 RAD51DO75771 328 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 LYZL6O75951 148 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 NCR1O76036 304 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 CD40LGP29965 261 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 THBS4P35443 961 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 GNALP38405 381 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 DDOSTP39656 456 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 MAGEB1P43366 347 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 OR10A3P58181 314 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 HIKESHIQ53FT3 197 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 SFRP5Q5T4F7 317 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 GLT8D1Q68CQ7 371 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 METAP1DQ6UB28 335 aaPredicted RBP11.16□□□□□ -0.62
VPS13D-205ENST00000473099 COLCA1Q6ZS62 124 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 CCDC190Q86UF4 302 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 LRRC28Q86X40 367 aaPredicted RBP11.16□□□□□ -0.62
VPS13D-205ENST00000473099 CDH26Q8IXH8 852 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 ZNF610Q8N9Z0 462 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 CPEB3Q8NE35 698 aaKnown RBP11.16□□□□□ -0.62
VPS13D-205ENST00000473099 OR14K1Q8NGZ2 314 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 SLC7A6Q92536 515 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 APOBEC3DQ96AK3 386 aaPredicted RBP11.16□□□□□ -0.62
VPS13D-205ENST00000473099 FGGYQ96C11 551 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 BBC3Q96PG8 261 aaPredicted RBP11.16□□□□□ -0.62
VPS13D-205ENST00000473099 VKORC1Q9BQB6 163 aa11.16□□□□□ -0.62
VPS13D-205ENST00000473099 SLC30A2Q9BRI3 323 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms