RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 CTXN1P60606 82 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 RAB5BP61020 215 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 AKR1C1Q04828 323 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 PMPCAQ10713 525 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 PPP1R1AQ13522 171 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 FAM53BQ14153 422 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 SLC17A1Q14916 467 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ELOA3BQ3SY89 546 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 LRRC37A5PQ49AS3 106 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 GXYLT1Q4G148 440 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 AWAT2Q6E213 333 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 TMEM225Q6GV28 225 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ASPHD2Q6ICH7 369 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 PAPD4Q6PIY7 484 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF627Q7L945 461 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ADGRE4PQ86SQ3 457 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 MISPQ8IVT2 679 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 BOLLQ8N9W6 283 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ELOA3Q8NG57 546 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 OR6N2Q8NGY6 317 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 OTOSQ8NHW6 89 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 PAQR8Q8TEZ7 354 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 OIT3Q8WWZ8 545 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF251Q9BRH9 671 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ADAT1Q9BUB4 502 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 NMES1Q9C002 83 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 SRMSQ9H3Y6 488 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 SRA1Q9HD15 236 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CYTL1Q9NRR1 136 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 RCC2Q9P258 522 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CKLFQ9UBR5 152 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 DCTN6O00399 190 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CCSO14618 274 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CSTAP01040 98 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CD2P06729 351 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 FAM87AP0C7U9 286 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 LYL1P12980 280 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 TBPP20226 339 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CENPAP49450 140 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ADAM8P78325 824 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 IL13RA1P78552 427 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ROM1Q03395 351 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ECH1Q13011 328 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 AIMP2Q13155 320 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ATXN7L3Q14CW9 347 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 PEA15Q15121 130 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 MST1LQ2TV78 715 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 PLEKHN1Q494U1 663 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 RNF212Q495C1 297 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 RNASE10Q5GAN6 216 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 C1orf100Q5SVJ3 147 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 WBP2NLQ6ICG8 309 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 FIGLAQ6QHK4 219 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 DPY19L4Q7Z388 723 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF584Q8IVC4 421 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CA13Q8N1Q1 262 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 C15orf54Q8N8G6 183 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 RNF128Q8TEB7 428 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 AQP3Q92482 292 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 VSTM2LQ96N03 204 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 NRIP2Q9BQI9 281 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 PTDSS2Q9BVG9 487 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ULBP3Q9BZM4 244 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 SPRY4Q9C004 299 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 CST11Q9H112 138 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 TREM1Q9NP99 234 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 MMP25Q9NPA2 562 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 GRHPRQ9UBQ7 328 aa8.55□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF346Q9UL40 294 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 NOSIPQ9Y314 301 aaKnown RBP8.55□□□□□ -1.04
HDAC3-205ENST00000469550 SCN3AQ9NY46 2000 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 PIEZO2Q9H5I5 2752 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 LOC390937A0A1W2PQ73 354 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 C5orf52A6NGY3 159 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF860A6NHJ4 632 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 S100A9P06702 114 aaKnown RBP8.54□□□□□ -1.04
HDAC3-205ENST00000469550 FABP1P07148 127 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 PGAM2P15259 253 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 ACTR1BP42025 376 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 PTGFRP43088 359 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 CAV2P51636 162 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 ACTR1AP61163 376 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 SRSF3P84103 164 aaKnown RBP8.54□□□□□ -1.04
HDAC3-205ENST00000469550 GPR18Q14330 331 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 NKPD1Q17RQ9 610 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 SCGB2B2Q4G0G5 96 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 MESTQ5EB52 335 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 WDR74Q6RFH5 385 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-205ENST00000469550 UNQ6126/PRO20091Q6UXV3 157 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 ATG4DQ86TL0 474 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF679Q8IYX0 411 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 OR4N2Q8NGD1 307 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 PATE1Q8WXA2 126 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 RERGQ96A58 199 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-205ENST00000469550 MRGPRFQ96AM1 343 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 ZFYVE21Q9BQ24 234 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 TCEAL7Q9BRU2 100 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 KCNK15Q9H427 330 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 CHMP1AQ9HD42 196 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms