RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 FAM209AQ5JX71 171 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 SLC25A47Q6Q0C1 308 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 C3P1Q6ZMU1 363 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 RHOUQ7L0Q8 258 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 NARFLQ9H6Q4 476 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 FANCFQ9NPI8 374 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 COLQQ9Y215 455 aaPredicted RBP16.87■□□□□ 0.29
VIM-203ENST00000469543 IGLV3-32A0A0A0MS00 114 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 IGHV1-45A0A0A0MS14 117 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 OR14I1A6ND48 311 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 ZNF878C9JN71 531 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 SOCS1O15524 211 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 TPPPO94811 219 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 CCDC157Q569K6 752 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 RAET1LQ5VY80 246 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 COQ8AQ8NI60 647 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 RADILQ96JH8 1075 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 OXGR1Q96P68 337 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 SLC26A1Q9H2B4 701 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 C19orf25Q9UFG5 118 aaPredicted RBP16.86■□□□□ 0.29
VIM-203ENST00000469543 PMS2P1A4D2B8 440 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 METTL21EPA6NDL7 271 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 CX3CR1P49238 355 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 GLIPR1L1Q6UWM5 242 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 TMPPEQ6ZT21 453 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 TMUB2Q71RG4 321 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 C1QL2Q7Z5L3 287 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 SLC22A24Q8N4F4 322 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 NKAIN3Q8N8D7 197 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 FADS6Q8N9I5 356 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 ZNF160Q9HCG1 818 aa16.86■□□□□ 0.29
VIM-203ENST00000469543 PMP2P02689 132 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 PDGFAP04085 211 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 DBHP09172 617 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 PPP3CBP16298 524 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 NHLRC3Q5JS37 347 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 CLLU1Q5K131 121 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 OR5AS1Q8N127 324 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 ZNF283Q8N7M2 679 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.85■□□□□ 0.29
VIM-203ENST00000469543 OR6X1Q8NH79 312 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 CXorf58Q96LI9 332 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 RAB22AQ9UL26 194 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 ZFHX4Q86UP3 3567 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 IGKV1-9A0A0C4DH69 117 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 OR5H15A6NDH6 313 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 SSX5O60225 188 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 HLA-AP01891 365 aaKnown RBP16.85■□□□□ 0.29
VIM-203ENST00000469543 COX6A1P12074 109 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 ZNF20P17024 532 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 BEX5Q5H9J7 111 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 PLAC9Q5JTB6 97 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 C12orf45Q8N5I9 185 aaPredicted RBP16.85■□□□□ 0.29
VIM-203ENST00000469543 ADAD2Q8NCV1 583 aaKnown RBP16.85■□□□□ 0.29
VIM-203ENST00000469543 CST11Q9H112 138 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 LAMA5O15230 3695 aa16.85■□□□□ 0.29
VIM-203ENST00000469543 ZSCAN5BA6NJL1 495 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 AQP7P3A6NL99 342 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 OR2AT4A6NND4 320 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 D6RAR5 112 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 ZIC3O60481 467 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 MPIG6BO95866 241 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 AVPR2P30518 371 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 S100A11P31949 105 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 CD96P40200 585 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 IMMP1LQ96LU5 166 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 FN3KRPQ9HA64 309 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 A0A0G2JMM0 328 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 A0A1W2PPB8 328 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 A0A1W2PRS3 328 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 KIR3DP1A8MWS1 328 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 SPDEFO95238 335 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 CRYZL1O95825 349 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 KLK3P07288 261 aaPredicted RBP16.84■□□□□ 0.29
VIM-203ENST00000469543 SLC6A9P48067 706 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 DHODHQ02127 395 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 ATXN7L3Q14CW9 347 aaPredicted RBP16.84■□□□□ 0.29
VIM-203ENST00000469543 CCDC28AQ8IWP9 274 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 STEAP2Q8NFT2 490 aa16.84■□□□□ 0.29
VIM-203ENST00000469543 RBM24Q9BX46 236 aaKnown RBP16.84■□□□□ 0.29
VIM-203ENST00000469543 GPN3Q9UHW5 284 aaPredicted RBP16.84■□□□□ 0.29
VIM-203ENST00000469543 TRAV14DV4A0A0A6YYC5 116 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 CD74P04233 296 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 HCKP08631 526 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 FGF5P12034 268 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 RAB14P61106 215 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 HIST3H3Q16695 136 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 RNASE10Q5GAN6 216 aaKnown RBP16.83■□□□□ 0.29
VIM-203ENST00000469543 FAM219AQ8IW50 185 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 TMEM156Q8N614 296 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 OR10K1Q8NGX5 313 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 TMEM41AQ96HV5 264 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 C1orf147Q96MC9 270 aaPredicted RBP16.83■□□□□ 0.29
VIM-203ENST00000469543 RDH8Q9NYR8 311 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 ZNF224Q9NZL3 707 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 KCNN3Q9UGI6 736 aa16.83■□□□□ 0.29
VIM-203ENST00000469543 SULT1C2O00338 296 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 TNFSF11O14788 317 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 AKR1C4P17516 323 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 NTF4P34130 210 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms