RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MRM2Q9UI43 246 aaKnown RBP10.21□□□□□ -0.77
VPS13D-204ENST00000469054 TMEM269A0A1B0GVZ9 245 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 C17orf100A8MU93 164 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 MAGEB4O15481 346 aaPredicted RBP10.2□□□□□ -0.78
VPS13D-204ENST00000469054 TBX1O43435 398 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 XRCC2O43543 280 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 F12P00748 615 aaPredicted RBP10.2□□□□□ -0.78
VPS13D-204ENST00000469054 MT-ND5P03915 603 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 KRT8P05787 483 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 SELEP16581 610 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 MMP15P51511 669 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 ZNF85Q03923 595 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 ZNF92Q03936 586 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 RAB40BQ12829 278 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 KLHL22Q53GT1 634 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 Q5PR19 223 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 ZNF684Q5T5D7 378 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 IZUMO2Q6UXV1 221 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 MRPL21Q7Z2W9 205 aaKnown RBP10.2□□□□□ -0.78
VPS13D-204ENST00000469054 THAP5Q7Z6K1 395 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 ACBD7Q8N6N7 88 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 OR2AE1Q8NHA4 323 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 FBLIM1Q8WUP2 373 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 NEU4Q8WWR8 484 aaPredicted RBP10.2□□□□□ -0.78
VPS13D-204ENST00000469054 SPSB4Q96A44 273 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 SGK3Q96BR1 496 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 PGAM5Q96HS1 289 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 REPIN1Q9BWE0 567 aaKnown RBP10.2□□□□□ -0.78
VPS13D-204ENST00000469054 TPK1Q9H3S4 243 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 FAM206AQ9NX38 181 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 ZNF319Q9P2F9 582 aa10.2□□□□□ -0.78
VPS13D-204ENST00000469054 PDZD2O15018 2839 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 PLSCR5A0PG75 271 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 DAPL1A0PJW8 107 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 METTL15A6NJ78 407 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 ZSCAN5BA6NJL1 495 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 ACOD1A6NK06 481 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 IQCF6A8MYZ5 107 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 SPRY3O43610 288 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 SSX4O60224 188 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 SULT1C4O75897 302 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 FADS2O95864 444 aaKnown RBP10.19□□□□□ -0.78
VPS13D-204ENST00000469054 VHLP40337 213 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 ZNF81P51508 661 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 MMP16P51512 607 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 TIGD6Q17RP2 521 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 ZNF829Q3KNS6 432 aaPredicted RBP10.19□□□□□ -0.78
VPS13D-204ENST00000469054 ZMAT1Q5H9K5 638 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 LIPNQ5VXI9 398 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 PLEKHG7Q6ZR37 379 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 OR5AS1Q8N127 324 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 YIPF7Q8N8F6 280 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 OR8G5Q8NG78 346 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 OR8B12Q8NGG6 310 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 GTF3AQ92664 365 aaKnown RBP10.19□□□□□ -0.78
VPS13D-204ENST00000469054 REEP6Q96HR9 211 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 RGCCQ9H4X1 137 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 OPA3Q9H6K4 179 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 MSL2Q9HCI7 577 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 NKIRAS2Q9NYR9 191 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 MYRFQ9Y2G1 1151 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 R4GMQ9 66 aa10.19□□□□□ -0.78
VPS13D-204ENST00000469054 PRRC2AP48634 2157 aaKnown RBP10.18□□□□□ -0.78
VPS13D-204ENST00000469054 IRGMA1A4Y4 181 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 GGT3PA6NGU5 568 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 CD300LBA8K4G0 201 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 SRSF10O75494 262 aaKnown RBP10.18□□□□□ -0.78
VPS13D-204ENST00000469054 LY6HO94772 140 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 PNPP00491 289 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 IGHV1-46P01743 117 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 IGHA1P01876 353 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 ADH4P08319 380 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 CFL1P23528 166 aaKnown RBP10.18□□□□□ -0.78
VPS13D-204ENST00000469054 MAGEB1P43366 347 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 HSPA13P48723 471 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 CLEC12BQ2HXU8 276 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 PCGF3Q3KNV8 242 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 FAM209AQ5JX71 171 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 LAIR2Q6ISS4 152 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 SPNS3Q6ZMD2 512 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 Q6ZR03 302 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 KCTD20Q7Z5Y7 419 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 WFDC11Q8NEX6 87 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 OR52I1Q8NGK6 324 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 SPRYD4Q8WW59 207 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-204ENST00000469054 SIGLEC11Q96RL6 698 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 DIRC2Q96SL1 478 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 MYCBPQ99417 103 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-204ENST00000469054 PBOV1Q9GZY1 135 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 FGF20Q9NP95 211 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-204ENST00000469054 INPP5EQ9NRR6 644 aa10.18□□□□□ -0.78
VPS13D-204ENST00000469054 CCDC168Q8NDH2 2452 aa10.17□□□□□ -0.78
VPS13D-204ENST00000469054 ARID1AO14497 2285 aa10.17□□□□□ -0.78
VPS13D-204ENST00000469054 LOC110117498-PIK3R3F6TDL0 507 aa10.17□□□□□ -0.78
VPS13D-204ENST00000469054 LILRA1O75019 489 aa10.17□□□□□ -0.78
VPS13D-204ENST00000469054 FAM20BO75063 409 aa10.17□□□□□ -0.78
VPS13D-204ENST00000469054 RPP14O95059 124 aaKnown RBP10.17□□□□□ -0.78
VPS13D-204ENST00000469054 HPXP02790 462 aa10.17□□□□□ -0.78
VPS13D-204ENST00000469054 TACSTD2P09758 323 aa10.17□□□□□ -0.78
VPS13D-204ENST00000469054 DCKP27707 260 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms