RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 ZBTB46Q86UZ6 589 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 OR2AJ1Q8NGZ0 328 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 OR4K13Q8NH42 304 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 OR52J3Q8NH60 311 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 MMADHCQ9H3L0 296 aaPredicted RBP18.75■□□□□ 0.59
USP4-208ENST00000464168 ERVK-18Q9QC07 812 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 POMT1Q9Y6A1 747 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 CD300LBA8K4G0 201 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 ARPC3O15145 178 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 SASH3O75995 380 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 PTBP3O95758 552 aaKnown RBP18.74■□□□□ 0.59
USP4-208ENST00000464168 HIST1H1CP16403 213 aaKnown RBP18.74■□□□□ 0.59
USP4-208ENST00000464168 KRTAP10-3P60369 221 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 SLC36A3Q495N2 470 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 BRICD5Q6PL45 260 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 ZNF620Q6ZNG0 422 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 FAM86B1Q8N7N1 296 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 BOLLQ8N9W6 283 aaKnown RBP18.74■□□□□ 0.59
USP4-208ENST00000464168 SSMEM1Q8WWF3 244 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 WDFY2Q96P53 400 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 CCT8L2Q96SF2 557 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 KCTD14Q9BQ13 255 aaPredicted RBP18.74■□□□□ 0.59
USP4-208ENST00000464168 FN3KRPQ9HA64 309 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 KRCC1Q9NPI7 259 aaPredicted RBP18.74■□□□□ 0.59
USP4-208ENST00000464168 RPRD1BQ9NQG5 326 aaKnown RBP18.74■□□□□ 0.59
USP4-208ENST00000464168 KIF17Q9P2E2 1029 aa18.74■□□□□ 0.59
USP4-208ENST00000464168 C3orf80F5H4A9 247 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 RENP00797 406 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 KCNJ8Q15842 424 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 MRPL21Q7Z2W9 205 aaKnown RBP18.73■□□□□ 0.59
USP4-208ENST00000464168 FANK1Q8TC84 345 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 GATAD2BQ8WXI9 593 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 MAP6Q96JE9 813 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 SLC22A4Q9H015 551 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 RASSF4Q9H2L5 321 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 OR52D1Q9H346 318 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 EFCAB1Q9HAE3 211 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 SMURF1Q9HCE7 757 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 ACOXLQ9NUZ1 547 aa18.73■□□□□ 0.59
USP4-208ENST00000464168 OR6C68A6NDL8 312 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 ADAM20O43506 726 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 GMDSO60547 372 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 FCN3O75636 299 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 ANOS1P23352 680 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 SLC6A6P31641 620 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 TPTEP56180 551 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 HACD2Q6Y1H2 254 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 PLPP7Q8NBV4 271 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 SIRPDQ9H106 197 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 FN3KQ9H479 309 aa18.72■□□□□ 0.59
USP4-208ENST00000464168 DCAF13Q9NV06 445 aaKnown RBP18.72■□□□□ 0.59
USP4-208ENST00000464168 MRPL22Q9NWU5 206 aaKnown RBP18.72■□□□□ 0.59
USP4-208ENST00000464168 NOP16Q9Y3C1 178 aaKnown RBP18.72■□□□□ 0.59
USP4-208ENST00000464168 IGHV1-69DA0A0B4J2H0 117 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 M0R135 149 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 NDUFAB1O14561 156 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 IGHV1-69P01742 117 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 HLA-DQA2P01906 255 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 H2AFXP16104 143 aaPredicted RBP18.71■□□□□ 0.59
USP4-208ENST00000464168 RPL15P61313 204 aaKnown RBP18.71■□□□□ 0.59
USP4-208ENST00000464168 ZNF92Q03936 586 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 OR8B8Q15620 311 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 SNAI3Q3KNW1 292 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 PNLDC1Q8NA58 520 aaKnown RBP18.71■□□□□ 0.59
USP4-208ENST00000464168 TBC1D15Q8TC07 691 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 DYRK2Q92630 601 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 ZNF799Q96GE5 643 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 ADAT1Q9BUB4 502 aaKnown RBP18.71■□□□□ 0.59
USP4-208ENST00000464168 IFT27Q9BW83 186 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 TRIM15Q9C019 465 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 MMP27Q9H306 513 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 ABCD2Q9UBJ2 740 aa18.71■□□□□ 0.59
USP4-208ENST00000464168 TRAV38-1A0A0B4J264 116 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 A0A0G2JK05 382 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 C5orf63A6NC05 138 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 OOEPA6NGQ2 149 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 M0QZ24 198 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 NDUFA2O43678 99 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 KRT72Q14CN4 511 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 PDCD1Q15116 288 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 METTL11BQ5VVY1 283 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 GLYATQ6IB77 296 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 ASPHD2Q6ICH7 369 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 SDR9C7Q8NEX9 313 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 OR2AE1Q8NHA4 323 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 LINC01006Q8NI28 216 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 LHX4Q969G2 390 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 RNF114Q9Y508 228 aa18.7■□□□□ 0.58
USP4-208ENST00000464168 TIMM23O14925 209 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 IDH3BO43837 385 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 GPR137BO60478 399 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 IGHV4-59P01825 116 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 GYPAP02724 150 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 NOS3P29474 1203 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 NUDT2P50583 147 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 ARF6P62330 175 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 ZNF826PQ6ZT77 177 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 FAM90A1Q86YD7 464 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 SPTSSAQ969W0 71 aa18.69■□□□□ 0.58
USP4-208ENST00000464168 RBM4BQ9BQ04 359 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms