RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 HAAOP46952 286 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TGM4P49221 684 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 CAV2P51636 162 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 UCNP55089 124 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 PLPPR5Q32ZL2 321 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 LSRQ86X29 649 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TUSC5Q8IXB3 177 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 CISD2Q8N5K1 135 aaKnown RBP6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TTTY12Q9BZ98 90 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 RGCCQ9H4X1 137 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 SPACA1Q9HBV2 294 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 TANC1Q9C0D5 1861 aa6.61□□□□□ -1.35
SYNE1-213ENST00000448038 MASP2O00187 686 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 PMS2P2O95744 297 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 EPPINO95925 133 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 HOXB5P09067 269 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 PATE4P0C8F1 98 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF83P51522 516 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF169Q14929 603 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 DEGS2Q6QHC5 323 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 NPEPL1Q8NDH3 523 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 DEFB108BQ8NET1 73 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GIMAP1Q8WWP7 306 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 FOXJ2Q9P0K8 574 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 IL17BQ9UHF5 180 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 APC2O95996 2303 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 MPPED1O15442 326 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 PEX14O75381 377 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 COX6A1P12074 109 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GLRA1P23415 457 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 FHL5Q5TD97 284 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 OR10K2Q6IF99 312 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 HAGHLQ6PII5 290 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF574Q6ZN55 896 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 SLC25A26Q70HW3 274 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ABHD3Q8WU67 409 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 NKX3-1Q99801 234 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 OPA3Q9H6K4 179 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GCM2O75603 506 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF17P17021 662 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 KIR2DL3P43628 341 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 SELENOPP49908 381 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 DLX5P56178 289 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 IGLV3-21P80748 117 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 AADACL3Q5VUY0 350 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 C4orf45Q96LM5 186 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 DOK1Q99704 481 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GPA33Q99795 319 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GLRX2Q9NS18 164 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 NUP50Q9UKX7 468 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TRAV1-2A0A0B4J238 106 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 FAM90A27PA6NNH2 459 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GABARAPH6UMI1 98 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 EFSO43281 561 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GDF9O60383 454 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ZFPL1O95159 310 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 NDUFB7P17568 137 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 S100A1P23297 94 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 PTBP1P26599 531 aaKnown RBP eCLIP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 THBS4P35443 961 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TAF9Q16594 264 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TMEM211Q6ICI0 200 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 FBXW12Q6X9E4 464 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 GPR155Q7Z3F1 870 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TMEM185AQ8NFB2 350 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 CA5BP1Q8WTZ4 195 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 PP6455Q8WZ26 134 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TIMD4Q96H15 378 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 C11orf54Q9H0W9 315 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 PRMT8Q9NR22 394 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 THADAQ6YHU6 1953 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ARPC5O15511 151 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 SPINT2O43291 252 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 NKX2-5P52952 324 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TAS2R20P59543 309 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 CATR1Q13166 79 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 PCOLCEQ15113 449 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 FXNQ16595 210 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 AGAP6Q5VW22 663 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 XAF1Q6GPH4 301 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 LINC00299Q6ZSB3 139 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 SLC30A7Q8NEW0 376 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 OR52I2Q8NH67 350 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 DCUN1D4Q92564 292 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 RDH5Q92781 318 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 OR2M2Q96R28 347 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TMEM246Q9BRR3 403 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 ANGPTL4Q9BY76 406 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 TMEM100Q9NV29 134 aa6.6□□□□□ -1.35
SYNE1-213ENST00000448038 A0A1B0GTH9 108 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 TMEM235A6NFC5 223 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF732B4DXR9 585 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 SH2D1BO14796 132 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 PLPP2O43688 288 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF728P0DKX0 622 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 EPXP11678 715 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 ALOX5APP20292 161 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 MGAT2Q10469 447 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 INPP5JQ15735 1006 aaPredicted RBP6.59□□□□□ -1.35
SYNE1-213ENST00000448038 CEBPEQ15744 281 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms